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Fil-C b6dd634 · shared cancellation
Fil-C b6dd634 · shared cancellation · runningRunner calibration · timeoutRunner calibration · native fixturesThe first Filnix inventory

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obitools3-3.0.1b11
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.libalign._qsrassemble' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -msse2 -w -fPIC
python3.12-stem-1.8.3-unstable-2024-02-13
  control.controller...                                success (0.69s)
  interpreter.arguments...                             success (0.01s)
  interpreter.autocomplete...                          success (0.00s)
  interpreter.help...                                  success (0.01s)
  interpreter.commands...                              success (0.02s)
  examples...                                         /build/source/docs/_static/example/exit_used.py:17: RuntimeWarning: coroutine 'stream_event' was never awaited
  input()  # wait for user to press enter
RuntimeWarning: Enable tracemalloc to get the object allocation traceback
 success (2.08s)
  doctest...                                           success (0.23s)
Static error checking requires pyflakes version 0.7.3 or later. Please install it from ...
  https://pypi.org/project/pyflakes/
Style checks require pycodestyle version 1.4.2 or later. Please install it from...
  https://pypi.org/project/pycodestyle/
Type checks require mypy. Please install it from...
  http://mypy-lang.org/
TESTING FAILED (7 seconds)
  [UNIT TEST] test_stats (test.unit.util.proc.TestProc) ... FAIL
  [UNIT TEST] test_compression_lzma (test.unit.descriptor.remote.TestDescriptorDownloader) ... FAIL
You can re-run just these tests with:
  run_tests.py --unit --test util.proc
  run_tests.py --unit --test descriptor.remote
offlineimap-8.0.0
Build started
python3.12-stem-1.8.3-unstable-2024-02-13
error: Cannot build '/nix/store/vikj40x6cp5y41wbga5gxhh7x8fb0psa-python3.12-stem-1.8.3-unstable-2024-02-13-x86_64-unknown-linux-gnufilc0.drv'.
       Reason: builder failed with exit code 1.
       Output paths:
         /nix/store/77yvx1hl1gs9glx8lm4fss45imqmcnfb-python3.12-stem-1.8.3-unstable-2024-02-13-x86_64-unknown-linux-gnufilc0
         /nix/store/n3mb3pf0x7zbvn1if0x9x7543ranp3g2-python3.12-stem-1.8.3-unstable-2024-02-13-x86_64-unknown-linux-gnufilc0-dist
       Last 25 log lines:
       >   interpreter.help...                                  success (0.01s)
       >   interpreter.commands...                              success (0.02s)
       >   examples...                                         /build/source/docs/_static/example/exit_used.py:17: RuntimeWarning: coroutine 'stream_event' was never awaited
       >   input()  # wait for user to press enter
       > RuntimeWarning: Enable tracemalloc to get the object allocation traceback
       >  success (2.08s)
       >   doctest...                                           success (0.23s)
       >
       > Static error checking requires pyflakes version 0.7.3 or later. Please install it from ...
       >   https://pypi.org/project/pyflakes/
       > 
       > Style checks require pycodestyle version 1.4.2 or later. Please install it from...
       >   https://pypi.org/project/pycodestyle/
       > 
       > Type checks require mypy. Please install it from...
       >   http://mypy-lang.org/
       > 
       > TESTING FAILED (7 seconds)
       >   [UNIT TEST] test_stats (test.unit.util.proc.TestProc) ... FAIL
       >   [UNIT TEST] test_compression_lzma (test.unit.descriptor.remote.TestDescriptorDownloader) ... FAIL
       > 
       > You can re-run just these tests with:
       > 
       >   run_tests.py --unit --test util.proc
       >   run_tests.py --unit --test descriptor.remote
       For full logs, run:
         nix log /nix/store/vikj40x6cp5y41wbga5gxhh7x8fb0psa-python3.12-stem-1.8.3-unstable-2024-02-13-x86_64-unknown-linux-gnufilc0.drv
offlineimap-8.0.0
Sourcing python-remove-tests-dir-hook
Sourcing python-remove-bin-bytecode-hook.sh
Sourcing pypa-build-hook
Using pypaBuildPhase
Sourcing python-runtime-deps-check-hook
Using pythonRuntimeDepsCheckHook
Sourcing pypa-install-hook
Using pypaInstallPhase
Sourcing python-namespaces-hook
Sourcing python-catch-conflicts-hook.sh
→ unpackPhase
unpacking source archive /nix/store/dfysqrik5s36dlrywpqzxs0n3w81ywwi-source
source root is source
setting SOURCE_DATE_EPOCH to timestamp 315619200 of file "source/tests/requirements.txt"
→ patchPhase
applying patch /nix/store/pmyyqz5kms3fgggpqvpa8rl1wk0qk82b-sqlite-version-aware-threadsafety-check.patch
patching file offlineimap/folder/LocalStatusSQLite.py
applying patch /nix/store/a5i0hkl9srhni2p1n7mfjbirpi1d3skx-python312-comaptibility.patch
patching file offlineimap/CustomConfig.py
patching file offlineimap/CustomConfig.py
applying patch /nix/store/rg5cds626ff4fn7446rkw357jmxv766j-python312-compatibility.patch
patching file offlineimap/localeval.py
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
no configure script, doing nothing
→ buildPhase
Executing pypaBuildPhase
Creating a wheel...
pypa build flags: --no-isolation --outdir dist/ --wheel
* Getting build dependencies for wheel...
/build/source/offlineimap/folder/Base.py:252: SyntaxWarning: invalid escape sequence '\/'
  basename = re.sub('(^|\/)\.$', '\\1dot', basename)
/build/source/offlineimap/folder/Base.py:869: SyntaxWarning: invalid escape sequence '\s'
  msg_id = re.search(b"\nmessage-id:[\s]+(<[A-Za-z0-9!#$%&'*+-/=?^_`{}|~.@ ]+>)",
/build/source/offlineimap/folder/Gmail.py:78: SyntaxWarning: invalid escape sequence '\s'
  m = re.search('X-GM-LABELS\s*[(](.*)[)]', data[0])
/build/source/offlineimap/folder/IMAP.py:512: SyntaxWarning: invalid escape sequence '\s'
  if re.search("(?:^|\\r|\\n)%s:\s*%s(?:\\r|\\n)" %
/build/source/offlineimap/folder/IMAP.py:519: SyntaxWarning: invalid escape sequence '\s'
  uid = re.search("UID\s+(\d+)", item, flags=re.IGNORECASE)
/build/source/offlineimap/folder/IMAP.py:529: SyntaxWarning: invalid escape sequence '\d'
  uid = re.search("\d+\s+\(UID\s+(\d+)", found,
/build/source/offlineimap/folder/Maildir.py:31: SyntaxWarning: invalid escape sequence '\d'
  re_uidmatch = re.compile(',U=(\d+)')
/build/source/offlineimap/folder/Maildir.py:33: SyntaxWarning: invalid escape sequence '\d'
  re_timestampmatch = re.compile('(\d+)')
/build/source/offlineimap/folder/Maildir.py:64: SyntaxWarning: invalid escape sequence '\w'
  self.re_flagmatch = re.compile('%s2,(\w*)' % self.infosep)
/build/source/test/OLItest/TestRunner.py:237: SyntaxWarning: invalid escape sequence '\d'
  re_uidmatch = re.compile(',U=(\d+)')
/nix/store/01sa4zsjg3117lf3wjg3ab2dmpmrpb9q-python3.12-setuptools-78.1.1-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: offlineimap).
        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.
        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************
!!
  opt = self._enforce_underscore(opt, section)
warning: no previously-included files matching '.gitignore' found anywhere in distribution
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.bak' found anywhere in distribution
warning: no previously-included files matching '*.orig' found anywhere in distribution
warning: no previously-included files matching '*.rej' found anywhere in distribution
warning: no files found matching 'MAINTAINERS'
* Building wheel...
/nix/store/01sa4zsjg3117lf3wjg3ab2dmpmrpb9q-python3.12-setuptools-78.1.1-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
!!
        ********************************************************************************
        Usage of dash-separated 'description-file' will not be supported in future
        versions. Please use the underscore name 'description_file' instead.
        (Affected: offlineimap).
        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.
        See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
        ********************************************************************************
!!
  opt = self._enforce_underscore(opt, section)
warning: no previously-included files matching '.git' found anywhere in distribution
warning: no previously-included files matching '*.bak' found anywhere in distribution
warning: no previously-included files matching '*.orig' found anywhere in distribution
warning: no previously-included files matching '*.rej' found anywhere in distribution
warning: no files found matching 'MAINTAINERS'
Successfully built offlineimap-8.0.0-py3-none-any.whl
Finished creating a wheel...
Finished executing pypaBuildPhase
→ pythonRuntimeDepsCheckHook
Executing pythonRuntimeDepsCheck
Checking runtime dependencies for offlineimap-8.0.0-py3-none-any.whl
Finished executing pythonRuntimeDepsCheck
→ installPhase
Executing pypaInstallPhase
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Base.py:252: SyntaxWarning: invalid escape sequence '\/'
  basename = re.sub('(^|\/)\.$', '\\1dot', basename)
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Base.py:869: SyntaxWarning: invalid escape sequence '\s'
  msg_id = re.search(b"\nmessage-id:[\s]+(<[A-Za-z0-9!#$%&'*+-/=?^_`{}|~.@ ]+>)",
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Base.py:252: SyntaxWarning: invalid escape sequence '\/'
  basename = re.sub('(^|\/)\.$', '\\1dot', basename)
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Base.py:869: SyntaxWarning: invalid escape sequence '\s'
  msg_id = re.search(b"\nmessage-id:[\s]+(<[A-Za-z0-9!#$%&'*+-/=?^_`{}|~.@ ]+>)",
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Gmail.py:78: SyntaxWarning: invalid escape sequence '\s'
  m = re.search('X-GM-LABELS\s*[(](.*)[)]', data[0])
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Gmail.py:78: SyntaxWarning: invalid escape sequence '\s'
  m = re.search('X-GM-LABELS\s*[(](.*)[)]', data[0])
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/IMAP.py:512: SyntaxWarning: invalid escape sequence '\s'
  if re.search("(?:^|\\r|\\n)%s:\s*%s(?:\\r|\\n)" %
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/IMAP.py:519: SyntaxWarning: invalid escape sequence '\s'
  uid = re.search("UID\s+(\d+)", item, flags=re.IGNORECASE)
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/IMAP.py:529: SyntaxWarning: invalid escape sequence '\d'
  uid = re.search("\d+\s+\(UID\s+(\d+)", found,
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/IMAP.py:512: SyntaxWarning: invalid escape sequence '\s'
  if re.search("(?:^|\\r|\\n)%s:\s*%s(?:\\r|\\n)" %
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/IMAP.py:519: SyntaxWarning: invalid escape sequence '\s'
  uid = re.search("UID\s+(\d+)", item, flags=re.IGNORECASE)
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/IMAP.py:529: SyntaxWarning: invalid escape sequence '\d'
  uid = re.search("\d+\s+\(UID\s+(\d+)", found,
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Maildir.py:31: SyntaxWarning: invalid escape sequence '\d'
  re_uidmatch = re.compile(',U=(\d+)')
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Maildir.py:33: SyntaxWarning: invalid escape sequence '\d'
  re_timestampmatch = re.compile('(\d+)')
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Maildir.py:64: SyntaxWarning: invalid escape sequence '\w'
  self.re_flagmatch = re.compile('%s2,(\w*)' % self.infosep)
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Maildir.py:31: SyntaxWarning: invalid escape sequence '\d'
  re_uidmatch = re.compile(',U=(\d+)')
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Maildir.py:33: SyntaxWarning: invalid escape sequence '\d'
  re_timestampmatch = re.compile('(\d+)')
/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/offlineimap/folder/Maildir.py:64: SyntaxWarning: invalid escape sequence '\w'
  self.re_flagmatch = re.compile('%s2,(\w*)' % self.infosep)
Successfully installed offlineimap-8.0.0-py3-none-any.whl
make: Entering directory '/build/source/docs'
a2x -L -v -d manpage -f manpage offlineimap.txt
a2x: args: ['-L', '-v', '-d', 'manpage', '-f', 'manpage', 'offlineimap.txt']
a2x: resource files: []
a2x: resource directories: ['/nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/stylesheets']
a2x: executing: asciidoc [('--doctype', 'manpage'), ('--verbose',), ('--backend', 'docbook'), ('-a', 'a2x-format=manpage'), ('--out-file', '/build/source/docs/offlineimap.xml')]
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/asciidoc.conf
asciidoc: reading: /build/source/docs/offlineimap.txt
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/docbook45.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/code/code-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/graphviz/graphviz-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/latex/latex-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/music/music-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/source/source-highlight-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/lang-en.conf
asciidoc: writing: /build/source/docs/offlineimap.xml
asciidoc: include: /build/source/docs/offlineimap.known_issues.txt
asciidoc: offlineimap.txt: line 339: reading: /build/source/docs/offlineimap.known_issues.txt
a2x: chdir /build/source/docs
a2x: executing: "/nix/store/fz683z20nbk5xmmpjza4zscdqc4gv0k7-libxslt-1.1.43-bin/bin/xsltproc"  --stringparam callout.graphics 0 --stringparam navig.graphics 0 --stringparam admon.textlabel 1 --stringparam admon.graphics 0  "/nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/docbook-xsl/manpage.xsl" "/build/source/docs/offlineimap.xml"
Warn: meta author : no refentry/info/author                        offlineimap
Note: meta author : see http://www.docbook.org/tdg5/en/html/autho  offlineimap
Warn: meta author : no author data, so inserted a fixme            offlineimap
Note: Writing offlineimap.1
a2x: chdir /build/source/docs
a2x: deleting /build/source/docs/offlineimap.xml
a2x -L -v -d manpage -f manpage offlineimapui.txt
a2x: args: ['-L', '-v', '-d', 'manpage', '-f', 'manpage', 'offlineimapui.txt']
a2x: resource files: []
a2x: resource directories: ['/nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/stylesheets']
a2x: executing: asciidoc [('--doctype', 'manpage'), ('--verbose',), ('--backend', 'docbook'), ('-a', 'a2x-format=manpage'), ('--out-file', '/build/source/docs/offlineimapui.xml')]
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/asciidoc.conf
asciidoc: reading: /build/source/docs/offlineimapui.txt
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/docbook45.conf
obitools3-3.0.1b11
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
offlineimap-8.0.0
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/code/code-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/graphviz/graphviz-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/latex/latex-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/music/music-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/filters/source/source-highlight-filter.conf
asciidoc: reading: /nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/lang-en.conf
asciidoc: writing: /build/source/docs/offlineimapui.xml
a2x: chdir /build/source/docs
a2x: executing: "/nix/store/fz683z20nbk5xmmpjza4zscdqc4gv0k7-libxslt-1.1.43-bin/bin/xsltproc"  --stringparam callout.graphics 0 --stringparam navig.graphics 0 --stringparam admon.textlabel 1 --stringparam admon.graphics 0  "/nix/store/avkrmgv98x2720hhgy2qkqjvgxnmqzzz-asciidoc-10.2.1/lib/python3.12/site-packages/asciidoc/resources/docbook-xsl/manpage.xsl" "/build/source/docs/offlineimapui.xml"
obitools3-3.0.1b11
building 'obitools3.libalign._rassemble' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -msse2 -w -fPIC
offlineimap-8.0.0
Warn: meta author : no refentry/info/author                        offlineimapui
Note: meta author : see http://www.docbook.org/tdg5/en/html/autho  offlineimapui
Warn: meta author : no author data, so inserted a fixme            offlineimapui
Note: Writing offlineimapui.7
a2x: chdir /build/source/docs
a2x: deleting /build/source/docs/offlineimapui.xml
make: Leaving directory '/build/source/docs'
Finished executing pypaInstallPhase
→ pythonOutputDistPhase
Executing pythonOutputDistPhase
Finished executing pythonOutputDistPhase
→ fixupPhase
shrinking RPATHs of ELF executables and libraries in /nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0
checking for references to /build/ in /nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0...
gzipping man pages under /nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/share/man/
patching script interpreter paths in /nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0
stripping (with command strip and flags -S -p) in  /nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/lib /nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/bin
shrinking RPATHs of ELF executables and libraries in /nix/store/1ysws37xbrv0qdhirvwjfhi55fhz63xj-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0-dist
checking for references to /build/ in /nix/store/1ysws37xbrv0qdhirvwjfhi55fhz63xj-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0-dist...
patching script interpreter paths in /nix/store/1ysws37xbrv0qdhirvwjfhi55fhz63xj-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0-dist
Rewriting #!/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/bin/python3.12 to #!/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0
wrapping `/nix/store/46jva3q6xwpkl6nk50lg75z2j14jzjcn-offlineimap-8.0.0-x86_64-unknown-linux-gnufilc0/bin/offlineimap'...
Executing pythonRemoveTestsDir
Finished executing pythonRemoveTestsDir
→ pythonRemoveBinBytecodePhase
readline-all
Build started
oils-for-unix-0.29.0
Build started
→ unpackPhase
unpacking source archive /nix/store/6k89wd6h2rcv4rpybznhzwvcagh9w61n-oils-for-unix-0.29.0.tar.gz
source root is oils-for-unix-0.29.0
setting SOURCE_DATE_EPOCH to timestamp 1746152778 of file "oils-for-unix-0.29.0/_gen/bin/oils_for_unix.mycpp-souffle.cc"
→ patchPhase
patching script interpreter paths in _build
_build/oils.sh: interpreter directive changed from "#!/bin/sh" to "/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/sh"
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
patching script interpreter paths in ./configure
./configure: interpreter directive changed from "#!/bin/sh" to "/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/sh"
configure flags: --prefix=/nix/store/bmdvn4iaqvq1vcppnpsi451aibhf0il7-oils-for-unix-x86_64-unknown-linux-gnufilc0-0.29.0 --datarootdir=/nix/store/bmdvn4iaqvq1vcppnpsi451aibhf0il7-oils-for-unix-x86_64-unknown-linux-gnufilc0-0.29.0 --with-readline --readline=/nix/store/lxn40hq9wzvixa9n47q29cfzlwfz6m72-readline-all --build=x86_64-unknown-linux-gnu --host=x86_64-unknown-linux-gnufilc0
./configure INFO: Argument '--build=x86_64-unknown-linux-gnu' not used by this configure script
./configure INFO: Argument '--host=x86_64-unknown-linux-gnufilc0' not used by this configure script
./configure: Wrote _build/detected-cpp-config.h
./configure: Wrote _build/detected-config.sh
./configure: Wrote _build/detected-config.h
→ buildPhase
_build/oils.sh: Building oils-for-unix: _bin/cxx-opt-sh/oils-for-unix
    PWD = /build/oils-for-unix-0.29.0
    cxx = cxx
    variant = opt
    translator = mycpp
CXX _gen/bin/oils_for_unix.mycpp.cc
CXX _gen/bin/text_files.cc
build/ninja-rules-cpp.sh: line 341: time: command not found
CXX _gen/core/runtime.asdl.cc
obitools3-3.0.1b11
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.libalign._solexapairend' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -msse2 -w -fPIC
oils-for-unix-0.29.0
CXX _gen/core/value.asdl.cc
CXX _gen/cpp/build_stamp.cc
CXX _gen/data_lang/nil8.asdl.cc
obitools3-3.0.1b11
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.libalign.apat_pattern' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -msse2 -w -fPIC
oils-for-unix-0.29.0
CXX _gen/display/pretty.asdl.cc
CXX _gen/frontend/arg_types.cc
CXX _gen/frontend/consts.cc
obitools3-3.0.1b11
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.libalign.shifted_ali' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -msse2 -w -fPIC
oils-for-unix-0.29.0
CXX _gen/frontend/help_meta.cc
obitools3-3.0.1b11
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.parsers.embl' extension
creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -msse2 -w -fPIC
oils-for-unix-0.29.0
CXX _gen/frontend/id_kind.asdl.cc
CXX _gen/frontend/signal.cc
CXX _gen/frontend/syntax.asdl.cc
obitools3-3.0.1b11
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/embl.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.parsers.embl_genbank_features' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.parsers.fasta' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.parsers.fastq' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.parsers.genbank' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -msse2 -w -fPIC
oils-for-unix-0.29.0
CXX _gen/osh/arith_parse.cc
CXX _gen/ysh/grammar_tables.cc
obitools3-3.0.1b11
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.parsers.header' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/header.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.parsers.ngsfilter' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.parsers.tab' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/tab.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.parsers.universal' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/universal.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.uri.decode' extension
creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/uri/decode.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.writers.fasta' extension
creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/writers/fasta.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.writers.fastq' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/writers/fastq.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
building 'obitools3.writers.tab' extension
clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -msse2 -w -fPIC
clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/j3jml8xpr96brwx10pz71ldlf2qp0k3s-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/blz9qyva567dp2nwj8bms6mc43hdpbfr-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/writers/tab.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages
running build_scripts
creating build/scripts-3.12
copying and adjusting scripts/obi -> build/scripts-3.12
changing mode of build/scripts-3.12/obi from 644 to 755
/nix/store/01sa4zsjg3117lf3wjg3ab2dmpmrpb9q-python3.12-setuptools-78.1.1-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.
        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************
!!
  self.initialize_options()
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/obitools3
copying build/lib.linux-x86_64-cpython-312/obitools3/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3
copying build/lib.linux-x86_64-cpython-312/obitools3/version.py -> build/bdist.linux-x86_64/wheel/./obitools3
creating build/bdist.linux-x86_64/wheel/obitools3/apps
copying build/lib.linux-x86_64-cpython-312/obitools3/apps/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/apps
creating build/bdist.linux-x86_64/wheel/obitools3/apps/optiongroups
copying build/lib.linux-x86_64-cpython-312/obitools3/apps/optiongroups/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/apps/optiongroups
copying build/lib.linux-x86_64-cpython-312/obitools3/apps/arguments.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps
copying build/lib.linux-x86_64-cpython-312/obitools3/apps/command.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps
copying build/lib.linux-x86_64-cpython-312/obitools3/apps/config.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps
copying build/lib.linux-x86_64-cpython-312/obitools3/apps/logging.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps
copying build/lib.linux-x86_64-cpython-312/obitools3/apps/progress.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps
copying build/lib.linux-x86_64-cpython-312/obitools3/apps/temp.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps
creating build/bdist.linux-x86_64/wheel/obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/align.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/annotate.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/cat.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/clean.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/count.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/export.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/grep.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/head.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/history.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/import.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/less.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/ls.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/rm.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/sort.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/stats.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/tail.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/test.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
copying build/lib.linux-x86_64-cpython-312/obitools3/commands/uniq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands
creating build/bdist.linux-x86_64/wheel/obitools3/dms
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms
creating build/bdist.linux-x86_64/wheel/obitools3/dms/capi
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/capi/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/capi
creating build/bdist.linux-x86_64/wheel/obitools3/dms/column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column
creating build/bdist.linux-x86_64/wheel/obitools3/dms/column/typed_column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/column.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column
creating build/bdist.linux-x86_64/wheel/obitools3/dms/taxo
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/taxo/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/taxo
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/taxo
creating build/bdist.linux-x86_64/wheel/obitools3/dms/view
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/view/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/view
creating build/bdist.linux-x86_64/wheel/obitools3/dms/view/typed_view
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/view/typed_view/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/view/typed_view
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/view/typed_view
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/view/view.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/view
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/dms.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms
copying build/lib.linux-x86_64-cpython-312/obitools3/dms/object.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms
creating build/bdist.linux-x86_64/wheel/obitools3/files
copying build/lib.linux-x86_64-cpython-312/obitools3/files/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/files
copying build/lib.linux-x86_64-cpython-312/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/files
copying build/lib.linux-x86_64-cpython-312/obitools3/files/uncompress.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/files
copying build/lib.linux-x86_64-cpython-312/obitools3/files/universalopener.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/files
creating build/bdist.linux-x86_64/wheel/obitools3/format
copying build/lib.linux-x86_64-cpython-312/obitools3/format/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/format
copying build/lib.linux-x86_64-cpython-312/obitools3/format/fasta.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/format
copying build/lib.linux-x86_64-cpython-312/obitools3/format/fastq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/format
copying build/lib.linux-x86_64-cpython-312/obitools3/format/header.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/format
copying build/lib.linux-x86_64-cpython-312/obitools3/format/tab.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/format
creating build/bdist.linux-x86_64/wheel/obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/solexapairend.py -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign
creating build/bdist.linux-x86_64/wheel/obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/embl.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/header.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/tab.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/universal.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers
creating build/bdist.linux-x86_64/wheel/obitools3/uri
copying build/lib.linux-x86_64-cpython-312/obitools3/uri/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/uri
copying build/lib.linux-x86_64-cpython-312/obitools3/uri/decode.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/uri
creating build/bdist.linux-x86_64/wheel/obitools3/writers
copying build/lib.linux-x86_64-cpython-312/obitools3/writers/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/writers
copying build/lib.linux-x86_64-cpython-312/obitools3/writers/fasta.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/writers
copying build/lib.linux-x86_64-cpython-312/obitools3/writers/fastq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/writers
copying build/lib.linux-x86_64-cpython-312/obitools3/writers/tab.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/writers
copying build/lib.linux-x86_64-cpython-312/obitools3/utils.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3
running install_egg_info
running egg_info
creating python/OBITools3.egg-info
writing python/OBITools3.egg-info/PKG-INFO
writing dependency_links to python/OBITools3.egg-info/dependency_links.txt
writing top-level names to python/OBITools3.egg-info/top_level.txt
writing manifest file 'python/OBITools3.egg-info/SOURCES.txt'
reading manifest file 'python/OBITools3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'python'
warning: no files found matching '*.h' under directory 'python'
warning: no files found matching '*.txt' under directory 'doc/sphinx/source'
warning: no files found matching '*.rst' under directory 'doc/sphinx/source'
warning: no files found matching '*.py' under directory 'doc/sphinx/source'
warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext'
warning: no files found matching 'doc/sphinx/Makefile'
warning: no files found matching 'doc/sphinx/Doxyfile'
adding license file 'LICENSE'
writing manifest file 'python/OBITools3.egg-info/SOURCES.txt'
Copying python/OBITools3.egg-info to build/bdist.linux-x86_64/wheel/./OBITools3-3.0.1b11-py3.12.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/obitools3-3.0.1b11.data/scripts
copying build/scripts-3.12/obi -> build/bdist.linux-x86_64/wheel/obitools3-3.0.1b11.data/scripts
changing mode of build/bdist.linux-x86_64/wheel/obitools3-3.0.1b11.data/scripts/obi to 755
creating build/bdist.linux-x86_64/wheel/obitools3-3.0.1b11.dist-info/WHEEL
creating 'dist/obitools3-3.0.1b11-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'obitools3/__init__.py'
adding 'obitools3/utils.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/version.py'
adding 'obitools3/apps/__init__.py'
adding 'obitools3/apps/arguments.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/apps/command.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/apps/config.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/apps/logging.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/apps/progress.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/apps/temp.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/apps/optiongroups/__init__.py'
adding 'obitools3/commands/__init__.py'
adding 'obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/align.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/annotate.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/cat.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/clean.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/count.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/ecotag.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/export.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/grep.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/head.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/history.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/import.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/less.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/ls.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/rm.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/sort.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/stats.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/tail.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/test.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/commands/uniq.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/__init__.py'
adding 'obitools3/dms/dms.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/obiseq.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/object.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/capi/__init__.py'
adding 'obitools3/dms/column/__init__.py'
adding 'obitools3/dms/column/column.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/column/typed_column/__init__.py'
adding 'obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/taxo/__init__.py'
adding 'obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/view/__init__.py'
adding 'obitools3/dms/view/view.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/dms/view/typed_view/__init__.py'
adding 'obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/files/__init__.py'
adding 'obitools3/files/linebuffer.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/files/uncompress.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/files/universalopener.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/format/__init__.py'
adding 'obitools3/format/fasta.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/format/fastq.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/format/header.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/format/tab.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/__init__.py'
adding 'obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/_nws.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/libalign/solexapairend.py'
adding 'obitools3/parsers/__init__.py'
adding 'obitools3/parsers/embl.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/parsers/fasta.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/parsers/fastq.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/parsers/genbank.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/parsers/header.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/parsers/tab.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/parsers/universal.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/uri/__init__.py'
adding 'obitools3/uri/decode.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/writers/__init__.py'
adding 'obitools3/writers/fasta.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/writers/fastq.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3/writers/tab.cpython-312-x86_64-linux-gnufilc0.so'
adding 'obitools3-3.0.1b11.data/scripts/obi'
adding 'obitools3-3.0.1b11.dist-info/licenses/LICENSE'
adding 'obitools3-3.0.1b11.dist-info/METADATA'
adding 'obitools3-3.0.1b11.dist-info/WHEEL'
adding 'obitools3-3.0.1b11.dist-info/top_level.txt'
adding 'obitools3-3.0.1b11.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Finished executing setuptoolsBuildPhase
buildPhase completed in 14 minutes 35 seconds
→ installPhase
Executing pypaInstallPhase
Successfully installed obitools3-3.0.1b11-cp312-cp312-linux_x86_64.whl
Finished executing pypaInstallPhase
→ pythonOutputDistPhase
Executing pythonOutputDistPhase
Finished executing pythonOutputDistPhase
→ fixupPhase
shrinking RPATHs of ELF executables and libraries in /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/libcobitools3.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/utils.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/arguments.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/command.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/config.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/logging.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/progress.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/temp.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/align.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/annotate.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/cat.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/clean.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/count.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/export.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/grep.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/head.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/history.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/import.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/less.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/ls.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/rm.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/sort.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/stats.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/tail.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/test.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/uniq.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/dms.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/object.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/column.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnufilc0.so
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shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnufilc0.so
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shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnufilc0.so
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shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnufilc0.so
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shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/files/universalopener.cpython-312-x86_64-linux-gnufilc0.so
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shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/format/fastq.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/format/header.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/format/tab.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/embl.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/header.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/tab.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/universal.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/uri/decode.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/writers/fasta.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/writers/fastq.cpython-312-x86_64-linux-gnufilc0.so
shrinking /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/writers/tab.cpython-312-x86_64-linux-gnufilc0.so
checking for references to /build/ in /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0...
patching script interpreter paths in /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0
stripping (with command strip and flags -S -p) in  /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib /nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/bin
shrinking RPATHs of ELF executables and libraries in /nix/store/hc6xl3kj073fmzvx5qq1g3bp0dwgrny9-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0-dist
checking for references to /build/ in /nix/store/hc6xl3kj073fmzvx5qq1g3bp0dwgrny9-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0-dist...
patching script interpreter paths in /nix/store/hc6xl3kj073fmzvx5qq1g3bp0dwgrny9-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0-dist
Rewriting #!/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/bin/python3.12 to #!/nix/store/l4f8rn6y0jymzbmr08rayygy4xvchpxb-python3-3.12.5-x86_64-unknown-linux-gnufilc0
wrapping `/nix/store/97h8xv3sakgnyyjlvzjaaxfw1fs65wic-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/bin/obi'...
Executing pythonRemoveTestsDir
Finished executing pythonRemoveTestsDir
→ installCheckPhase
no Makefile or custom installCheckPhase, doing nothing
→ pythonRemoveBinBytecodePhase
oils-for-unix-0.29.0
_gen/bin/oils_for_unix.mycpp.cc:18895:16: warning: variable 'old_soft' set but not used [-Wunused-but-set-variable]
 18895 |   mops::BigInt old_soft;
       |                ^
_gen/bin/oils_for_unix.mycpp.cc:18896:16: warning: variable 'old_hard' set but not used [-Wunused-but-set-variable]
 18896 |   mops::BigInt old_hard;
       |                ^
_gen/bin/oils_for_unix.mycpp.cc:21146:8: warning: variable 'found_left' set but not used [-Wunused-but-set-variable]
 21146 |   bool found_left;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:21147:8: warning: variable 'found_right' set but not used [-Wunused-but-set-variable]
 21147 |   bool found_right;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:21273:8: warning: variable 'found_left' set but not used [-Wunused-but-set-variable]
 21273 |   bool found_left;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:21274:8: warning: variable 'found_right' set but not used [-Wunused-but-set-variable]
 21274 |   bool found_right;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:25228:7: warning: variable 'pid' set but not used [-Wunused-but-set-variable]
 25228 |   int pid;
       |       ^
_gen/bin/oils_for_unix.mycpp.cc:27523:9: warning: unused variable 'pid' [-Wunused-variable]
 27523 |     int pid = it.Key();
       |         ^~~
_gen/bin/oils_for_unix.mycpp.cc:28319:8: warning: variable 'success' set but not used [-Wunused-but-set-variable]
 28319 |   bool success;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:29763:8: warning: variable 'ok' set but not used [-Wunused-but-set-variable]
 29763 |   bool ok;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:30833:8: warning: variable 'found' set but not used [-Wunused-but-set-variable]
 30833 |   bool found;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:31171:30: warning: variable 'error_code' set but not used [-Wunused-but-set-variable]
 31171 |   runtime_asdl::error_code_t error_code;
       |                              ^
_gen/bin/oils_for_unix.mycpp.cc:32613:30: warning: variable 'error_code' set but not used [-Wunused-but-set-variable]
 32613 |   runtime_asdl::error_code_t error_code;
       |                              ^
_gen/bin/oils_for_unix.mycpp.cc:34917:31: warning: unused variable 'part' [-Wunused-variable]
 34917 |       word_part::BracedTuple* part = static_cast<word_part::BracedTuple*>(UP_part);
       |                               ^~~~
_gen/bin/oils_for_unix.mycpp.cc:35015:31: warning: unused variable 'part' [-Wunused-variable]
 35015 |       word_part::BracedTuple* part = static_cast<word_part::BracedTuple*>(UP_part);
       |                               ^~~~
_gen/bin/oils_for_unix.mycpp.cc:38217:32: warning: unused variable 'node' [-Wunused-variable]
 38217 |         command::ShAssignment* node = static_cast<command::ShAssignment*>(UP_node);
       |                                ^~~~
_gen/bin/oils_for_unix.mycpp.cc:38222:28: warning: unused variable 'node' [-Wunused-variable]
 38222 |         command::Subshell* node = static_cast<command::Subshell*>(UP_node);
       |                            ^~~~
_gen/bin/oils_for_unix.mycpp.cc:38227:28: warning: unused variable 'node' [-Wunused-variable]
 38227 |         command::Pipeline* node = static_cast<command::Pipeline*>(UP_node);
       |                            ^~~~
_gen/bin/oils_for_unix.mycpp.cc:38758:24: warning: unused variable 'cmd_val' [-Wunused-variable]
 38758 |     cmd_value::Assign* cmd_val = static_cast<cmd_value::Assign*>(UP_cmd_val);
       |                        ^~~~~~~
_gen/bin/oils_for_unix.mycpp.cc:39594:1: warning: non-void function does not return a value [-Wreturn-type]
 39594 | }
       | ^
_gen/bin/oils_for_unix.mycpp.cc:40129:8: warning: variable 'is_fatal' set but not used [-Wunused-but-set-variable]
 40129 |   bool is_fatal;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:41007:8: warning: variable 'quoted' set but not used [-Wunused-but-set-variable]
 41007 |   bool quoted;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:45659:7: warning: variable '_bytes_read' set but not used [-Wunused-but-set-variable]
 45659 |   int _bytes_read;
       |       ^
_gen/bin/oils_for_unix.mycpp.cc:45969:7: warning: variable 'start' set but not used [-Wunused-but-set-variable]
 45969 |   int start;
       |       ^
_gen/bin/oils_for_unix.mycpp.cc:47334:30: warning: variable 'error_code' set but not used [-Wunused-but-set-variable]
 47334 |   runtime_asdl::error_code_t error_code;
       |                              ^
_gen/bin/oils_for_unix.mycpp.cc:52841:24: warning: unused variable 'node' [-Wunused-variable]
 52841 |       command::DParen* node = static_cast<command::DParen*>(UP_node);
       |                        ^~~~
_gen/bin/oils_for_unix.mycpp.cc:52846:26: warning: unused variable 'node' [-Wunused-variable]
 52846 |       command::DBracket* node = static_cast<command::DBracket*>(UP_node);
       |                          ^~~~
_gen/bin/oils_for_unix.mycpp.cc:52914:29: warning: unused variable 'part0' [-Wunused-variable]
 52914 |               DoubleQuoted* part0 = static_cast<DoubleQuoted*>(UP_part0);
       |                             ^~~~~
_gen/bin/oils_for_unix.mycpp.cc:52952:7: warning: variable 'op_id' set but not used [-Wunused-but-set-variable]
 52952 |   int op_id;
       |       ^
_gen/bin/oils_for_unix.mycpp.cc:53006:8: warning: variable 'has_rhs' set but not used [-Wunused-but-set-variable]
 53006 |   bool has_rhs;
       |        ^
_gen/bin/oils_for_unix.mycpp.cc:53501:24: warning: unused variable 'node' [-Wunused-variable]
 53501 |       command::DParen* node = static_cast<command::DParen*>(UP_node);
       |                        ^~~~
_gen/bin/oils_for_unix.mycpp.cc:53506:26: warning: unused variable 'node' [-Wunused-variable]
 53506 |       command::DBracket* node = static_cast<command::DBracket*>(UP_node);
       |                          ^~~~
32 warnings generated.
CXX cpp/core.cc
CXX cpp/data_lang.cc
CXX cpp/fanos.cc
CXX cpp/fanos_shared.c
error: invalid argument '-std=c++11' not allowed with 'C'
nyx-2.1.0
error: Cannot build '/nix/store/qbhz11ciy0ci8mz9vxy9k5pgq8psywwz-nyx-2.1.0-x86_64-unknown-linux-gnufilc0.drv'.
       Reason: 1 dependency failed.
       Output paths:
         /nix/store/jy1kpw57hkbh0gzv7kz5kbz0brzlnlrd-nyx-2.1.0-x86_64-unknown-linux-gnufilc0
         /nix/store/y42ihkbjdasg98ds1dpxv6b9sd82z44l-nyx-2.1.0-x86_64-unknown-linux-gnufilc0-dist
oatpp-1.3.1
error: Cannot build '/nix/store/s7d1h6an71v5bx673ywvig906zhy4k26-oatpp-x86_64-unknown-linux-gnufilc0-1.3.1.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/dnqjq09p8pqjpka2bz9ncz4dn09yb6gg-oatpp-x86_64-unknown-linux-gnufilc0-1.3.1
       Last 25 log lines:
       > /build/source/src/oatpp/core/base/Environment.hpp:552:80: note: expanded from macro 'OATPP_LOGD'
       >   552 |   oatpp::base::Environment::logFormatted(oatpp::base::Logger::PRIORITY_D, TAG, __VA_ARGS__);
       >       |                                                                                ^~~~~~~~~~~
       > /build/source/test/oatpp/web/PipelineTest.cpp:132:10: note: in instantiation of function template specialization 'oatpp::test::web::ClientServerTestRunner::run<(lambda at /build/source/test/oatpp/web/PipelineTest.cpp:132:14)>' requested here
       >   132 |   runner.run([this] {
       >       |          ^
       > 1 warning generated.
       > In file included from /build/source/test/oatpp/web/FullTest.cpp:52:
       > /build/source/src/oatpp-test/web/ClientServerTestRunner.hpp:140:129: warning: format specifies type 'long' but the argument has type 'rep' (aka 'long long') [-Wformat]
       >   140 |     OATPP_LOGD("\033[1;34mClientServerTestRunner\033[0m", "\033[1;34mFinished with time %ld(micro). Stopping server...\033[0m", elapsed.count())
       >       |                                                                                         ~~~                                     ^~~~~~~~~~~~~~~
       >       |                                                                                         %lld
       > /build/source/src/oatpp/core/base/Environment.hpp:552:80: note: expanded from macro 'OATPP_LOGD'
       >   552 |   oatpp::base::Environment::logFormatted(oatpp::base::Logger::PRIORITY_D, TAG, __VA_ARGS__);
       >       |                                                                                ^~~~~~~~~~~
       > /build/source/test/oatpp/web/FullTest.cpp:152:10: note: in instantiation of function template specialization 'oatpp::test::web::ClientServerTestRunner::run<(lambda at /build/source/test/oatpp/web/FullTest.cpp:152:14)>' requested here
       >   152 |   runner.run([this] {
       >       |          ^
       > 1 warning generated.
       > [100%] Linking CXX executable oatppAllTests
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: cannot find -latomic
       > clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
       > make[2]: *** [test/CMakeFiles/oatppAllTests.dir/build.make:951: test/oatppAllTests] Error 1
       > make[1]: *** [CMakeFiles/Makefile2:197: test/CMakeFiles/oatppAllTests.dir/all] Error 2
       > make: *** [Makefile:166: all] Error 2
       For full logs, run:
         nix log /nix/store/s7d1h6an71v5bx673ywvig906zhy4k26-oatpp-x86_64-unknown-linux-gnufilc0-1.3.1.drv
oberon-risc-emu-unstable-2020-08-18
error: Cannot build '/nix/store/2c384wxp6azakiln260897vfmwv7jp21-oberon-risc-emu-x86_64-unknown-linux-gnufilc0-unstable-2020-08-18.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/0ilnv7vd4qxjdqj0zz9di67q0dx11z47-oberon-risc-emu-x86_64-unknown-linux-gnufilc0-unstable-2020-08-18
       Last 25 log lines:
       > Running phase: unpackPhase
       > unpacking source archive /nix/store/4x9ajrb09sz5nxkpqn6wzvch0s24v53w-source
       > source root is source
       > Running phase: patchPhase
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Running phase: configurePhase
       > no configure script, doing nothing
       > Running phase: buildPhase
       > build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
       > clang -o risc src/sdl-main.c src/sdl-ps2.c src/risc.c src/risc-fp.c src/disk.c src/pclink.c src/raw-serial.c src/sdl-clipboard.c -g -Os -Wall -Wextra -Wconversion -Wno-sign-conversion -Wno-unused-parameter -std=c99 `sdl2-config --cflags --libs` -lm
       > /nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: sdl2-config: command not found
       > src/sdl-main.c:1:10: fatal error: 'SDL.h' file not found
       >     1 | #include <SDL.h>
       >       |          ^~~~~~~
       > 1 error generated.
       > src/sdl-ps2.c:3:10: fatal error: 'SDL.h' file not found
       >     3 | #include <SDL.h>
       >       |          ^~~~~~~
       > 1 error generated.
       > src/sdl-clipboard.c:4:10: fatal error: 'SDL.h' file not found
       >     4 | #include <SDL.h>
       >       |          ^~~~~~~
       > 1 error generated.
       > make: *** [Makefile:17: risc] Error 1
       For full logs, run:
         nix log /nix/store/2c384wxp6azakiln260897vfmwv7jp21-oberon-risc-emu-x86_64-unknown-linux-gnufilc0-unstable-2020-08-18.drv
obj-magic-0.5-unstable-2020-09-20
error: Cannot build '/nix/store/fyiwqyglmy4lsr80i5cgkmg8hqy1b03b-obj-magic-x86_64-unknown-linux-gnufilc0-0.5-unstable-2020-09-20.drv'.
       Reason: builder failed with exit code 1.
       Output paths:
         /nix/store/lggvfvgxffgklqncsrzsl3wz99fs2sxl-obj-magic-x86_64-unknown-linux-gnufilc0-0.5-unstable-2020-09-20
       Last 14 log lines:
       > Running phase: unpackPhase
       > unpacking source archive /nix/store/va6mz49r3s5yfj6gv58c7f43y2k94xkl-source
       > source root is source
       > Running phase: patchPhase
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Running phase: configurePhase
       > no configure script, doing nothing
       > Running phase: buildPhase
       > + clang++ -O2 '-std=c++14' -Wall -Wextra -Wno-unused-parameter src/obj-magic.cpp -o obj-magic
       > /build/obj-magic-154104.o:obj-magic.cpp:function pizlonatedFI269_sqrtf:(.text+0x25a91): error: undefined reference to 'pizlonated_sqrtf'
       > /build/obj-magic-154104.o:obj-magic.cpp:function pizlonatedFI269_cosf:(.text+0x25f61): error: undefined reference to 'pizlonated_cosf'
       > /build/obj-magic-154104.o:obj-magic.cpp:function pizlonatedFI269_sinf:(.text+0x26031): error: undefined reference to 'pizlonated_sinf'
       > clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
       For full logs, run:
         nix log /nix/store/fyiwqyglmy4lsr80i5cgkmg8hqy1b03b-obj-magic-x86_64-unknown-linux-gnufilc0-0.5-unstable-2020-09-20.drv
obuild-0.1.11
error: Cannot build '/nix/store/jxhgzsa7q51bh4s52xq5vqxaxszb6qg5-obuild-x86_64-unknown-linux-gnufilc0-0.1.11.drv'.
       Reason: builder failed with exit code 6.
       Output paths:
         /nix/store/liflzkl7a5iaw0kb6j3504cgha6y8ysf-obuild-x86_64-unknown-linux-gnufilc0-0.1.11
       Last 25 log lines:
       > File "ext/fugue.ml", line 1:
       > Warning 70 [missing-mli]: Cannot find interface file.
       >
       > [ 3 of 57] Intfing Ext.Filepath
       > [ 4 of 57] Compiling Ext.Filepath
       > [ 5 of 57] Intfing Ext.Filesystem
       > [ 6 of 57] Compiling Ext.Filesystem
       > File "ext/filesystem.ml", lines 18-21, characters 11-58:
       > 18 | ...........match (Unix.lstat fent).Unix.st_kind with
       > 19 |            | Unix.S_DIR -> rmdir_recursive (Unix.rmdir) fent
       > 20 |            | Unix.S_REG -> Unix.unlink fent
       > 21 |            | _          -> raise (UnexpectedFileType fent)
       > Warning 4 [fragile-match]: this pattern-matching is fragile.
       > It will remain exhaustive when constructors are added to type Unix.file_kind.
       >
       > [ 7 of 57] Packing Ext
       >
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: fatal error: cannot mix -r with dynamic object /nix/store/hdhb0c160h0fhwznvhm9a6h176qbrdpp-filc-sysroot-with-metadata/lib/libpizlo.so
       > File "dist/build/lib-obuild.ext/ext.cmx", line 1:
       > Error: Error during partial linking
       >
       >
       > real	0m0.323s
       > user	0m0.188s
       > sys	0m0.178s
       For full logs, run:
         nix log /nix/store/jxhgzsa7q51bh4s52xq5vqxaxszb6qg5-obuild-x86_64-unknown-linux-gnufilc0-0.1.11.drv
ocrad-0.27
error: Cannot build '/nix/store/2r8viwd383vhf3zpxqrm3dssbyxma6bn-ocrad-x86_64-unknown-linux-gnufilc0-0.27.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/345ydwz6qinpsr4rzx0igagcmxnvj4zn-ocrad-x86_64-unknown-linux-gnufilc0-0.27
       Last 25 log lines:
       >     (libc.so.6666) ../csu/libc-start.c:159:3: __libc_start_main
       >     (libpizlo.so) <runtime>: start_program
       > [734] filc panic: thwarted a futile attempt to violate memory safety.
       > Trace/breakpoint trap
       >  183cmp: EOF on 'out' which is empty
       >  184filc safety error: cannot read pointer with ptr >= upper.
       >     pointer: 0x7ffff5fe96fc,0x7ffff5fe9300,0x7ffff5fe9600,global,readonly
       >     expected 2 bytes.
       > semantic origin:
       >     (ocradcheck) <somewhere>: Textline::recognize2(Charset const&)
       > check scheduled at:
       >     (ocradcheck) <somewhere>: Textline::recognize2(Charset const&)
       >     (ocradcheck) <somewhere>: Textblock::recognize(Control const&)
       >     (ocradcheck) <somewhere>: Textpage::Textpage(Page_image const&, char const*, Control const&, bool)
       >     (ocradcheck) <somewhere>: OCRAD_recognize
       >     (ocradcheck) <somewhere>: main
       >     (libc.so.6666) ../sysdeps/nptl/libc_start_call_main.h:59:16: __libc_start_call_main
       >     (libc.so.6666) ../csu/libc-start.c:159:3: __libc_start_main
       >     (libpizlo.so) <runtime>: start_program
       > [738] filc panic: thwarted a futile attempt to violate memory safety.
       > Trace/breakpoint trap
       >  185cmp: EOF on 'out' which is empty
       >  186
       > tests failed.
       > make: *** [Makefile:115: check] Error 1
       For full logs, run:
         nix log /nix/store/2r8viwd383vhf3zpxqrm3dssbyxma6bn-ocrad-x86_64-unknown-linux-gnufilc0-0.27.drv
octodns-1.11.0
error: Cannot build '/nix/store/pfp8vki42vxjl4ghbrgvdxrzi8k4mnv7-octodns-1.11.0-x86_64-unknown-linux-gnufilc0.drv'.
       Reason: 2 dependencies failed.
       Output paths:
         /nix/store/67cf7s18869yxl5bip3r9y5kazjimgqw-octodns-1.11.0-x86_64-unknown-linux-gnufilc0
         /nix/store/g2rhxydhjgi362nf06v49d3pbfc3mf90-octodns-1.11.0-x86_64-unknown-linux-gnufilc0-dist
odyssey-1.3
error: Cannot build '/nix/store/4bzhsmkdym07zdqhlax32fp34a6pchna-odyssey-x86_64-unknown-linux-gnufilc0-1.3.drv'.
       Reason: 1 dependency failed.
       Output paths:
         /nix/store/8rg5bnfvgk7z0c61z6ahqrz41891gkx2-odyssey-x86_64-unknown-linux-gnufilc0-1.3
offrss-1.3
error: Cannot build '/nix/store/73kfknmh9skd28zplq39dmky43is89sj-offrss-x86_64-unknown-linux-gnufilc0-1.3.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/1ibkayr27br5pdpi3a27hhl1g4cb4jna-offrss-x86_64-unknown-linux-gnufilc0-1.3
       Last 25 log lines:
       > 26 clang-20  0x00000000029f0b0d clang::driver::Compilation::ExecuteCommand(clang::driver::Command const&, clang::driver::Command const*&, bool) const + 173
       > 27 clang-20  0x00000000029f1137 clang::driver::Compilation::ExecuteJobs(clang::driver::JobList const&, llvm::SmallVectorImpl<std::pair<int, clang::driver::Command const*>>&, bool) const + 135
       > 28 clang-20  0x0000000002a02d74 clang::driver::Driver::ExecuteCompilation(clang::driver::Compilation&, llvm::SmallVectorImpl<std::pair<int, clang::driver::Command const*>>&) + 436
       > 29 clang-20  0x0000000000c79149 clang_main(int, char**, llvm::ToolContext const&) + 7241
       > 30 clang-20  0x0000000000b840b4 main + 100
       > 31 libc.so.6 0x00007ffff7c2a47e
       > 32 libc.so.6 0x00007ffff7c2a539 __libc_start_main + 137
       > 33 clang-20  0x0000000000c74e95 _start + 37
       > clang-20: error: clang frontend command failed with exit code 134 (use -v to see invocation)
       > clang version 20.1.8 (Fil-C 0.685)
       > Target: x86_64-pc-linux-gnu
       > Thread model: posix
       > InstalledDir: /nix/store/hmjzrg1ppdzlcqry73nyyb8p9wzgryjq-filc0-git/bin
       > Build config: +assertions
       > clang-20: note: diagnostic msg:
       > ********************
       >
       > PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT:
       > Preprocessed source(s) and associated run script(s) are located at:
       > clang-20: note: diagnostic msg: /build/offrss-45bd43.c
       > clang-20: note: diagnostic msg: /build/offrss-45bd43.sh
       > clang-20: note: diagnostic msg:
       >
       > ********************
       > make: *** [Makefile:28: offrss.o] Error 1
       For full logs, run:
         nix log /nix/store/73kfknmh9skd28zplq39dmky43is89sj-offrss-x86_64-unknown-linux-gnufilc0-1.3.drv
ogmtools-1.5
error: Cannot build '/nix/store/fy9zh066h5mcnj1qgps5k8m9v380p6c6-ogmtools-x86_64-unknown-linux-gnufilc0-1.5.drv'.
       Reason: builder failed with exit code 77.
       Output paths:
         /nix/store/jz7f8rfd8r1937v0gwk3afvzizh0z12f-ogmtools-x86_64-unknown-linux-gnufilc0-1.5
       Last 23 log lines:
       > Running phase: unpackPhase
       > unpacking source archive /nix/store/imzwz7yhxmslw18hn2w4adharxsmnm75-ogmtools-1.5.tar.bz2
       > source root is ogmtools-1.5
       > setting SOURCE_DATE_EPOCH to timestamp 1099821763 of file "ogmtools-1.5/avilib/Makefile.in"
       > Running phase: patchPhase
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Updating Autotools / GNU config script to a newer upstream version: ./config.sub
       > Updating Autotools / GNU config script to a newer upstream version: ./config.guess
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Updating Autotools / GNU config script to a newer upstream version: ./config.sub
       > Updating Autotools / GNU config script to a newer upstream version: ./config.guess
       > Running phase: configurePhase
       > patching script interpreter paths in ./configure
       > ./configure: interpreter directive changed from "#! /bin/sh" to "/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/sh"
       > configure flags: --disable-dependency-tracking --prefix=/nix/store/jz7f8rfd8r1937v0gwk3afvzizh0z12f-ogmtools-x86_64-unknown-linux-gnufilc0-1.5 --build=x86_64-unknown-linux-gnu --host=x86_64-unknown-linux-gnufilc0
       > checking for a BSD-compatible install... /nix/store/rry6qingvsrqmc7ll7jgaqpybcbdgf5v-coreutils-9.7/bin/install -c
       > checking whether build environment is sane... yes
       > checking for gawk... gawk
       > checking whether make sets $(MAKE)... yes
       > checking for x86_64-unknown-linux-gnufilc0-strip... strip
       > checking for x86_64-unknown-linux-gnufilc0-gcc... clang
       > checking for C compiler default output file name... configure: error: C compiler cannot create executables
       > See `config.log' for more details.
       For full logs, run:
         nix log /nix/store/fy9zh066h5mcnj1qgps5k8m9v380p6c6-ogmtools-x86_64-unknown-linux-gnufilc0-1.5.drv
oils-for-unix-0.29.0
error: Cannot build '/nix/store/sgr8k34ynd1c44d9pclbx21i504sig4w-oils-for-unix-x86_64-unknown-linux-gnufilc0-0.29.0.drv'.
       Reason: builder failed with exit code 1.
       Output paths:
         /nix/store/bmdvn4iaqvq1vcppnpsi451aibhf0il7-oils-for-unix-x86_64-unknown-linux-gnufilc0-0.29.0
       Last 25 log lines:
       >        |                        ^~~~
       > _gen/bin/oils_for_unix.mycpp.cc:52846:26: warning: unused variable 'node' [-Wunused-variable]
       >  52846 |       command::DBracket* node = static_cast<command::DBracket*>(UP_node);
       >        |                          ^~~~
       > _gen/bin/oils_for_unix.mycpp.cc:52914:29: warning: unused variable 'part0' [-Wunused-variable]
       >  52914 |               DoubleQuoted* part0 = static_cast<DoubleQuoted*>(UP_part0);
       >        |                             ^~~~~
       > _gen/bin/oils_for_unix.mycpp.cc:52952:7: warning: variable 'op_id' set but not used [-Wunused-but-set-variable]
       >  52952 |   int op_id;
       >        |       ^
       > _gen/bin/oils_for_unix.mycpp.cc:53006:8: warning: variable 'has_rhs' set but not used [-Wunused-but-set-variable]
       >  53006 |   bool has_rhs;
       >        |        ^
       > _gen/bin/oils_for_unix.mycpp.cc:53501:24: warning: unused variable 'node' [-Wunused-variable]
       >  53501 |       command::DParen* node = static_cast<command::DParen*>(UP_node);
       >        |                        ^~~~
       > _gen/bin/oils_for_unix.mycpp.cc:53506:26: warning: unused variable 'node' [-Wunused-variable]
       >  53506 |       command::DBracket* node = static_cast<command::DBracket*>(UP_node);
       >        |                          ^~~~
       > 32 warnings generated.
       > CXX cpp/core.cc
       > CXX cpp/data_lang.cc
       > CXX cpp/fanos.cc
       > CXX cpp/fanos_shared.c
       > error: invalid argument '-std=c++11' not allowed with 'C'
       For full logs, run:
         nix log /nix/store/sgr8k34ynd1c44d9pclbx21i504sig4w-oils-for-unix-x86_64-unknown-linux-gnufilc0-0.29.0.drv
olsrd-0.9.8
error: Cannot build '/nix/store/sv8w4rx9sdxkzn9c1knim8rnl1h44zrg-olsrd-x86_64-unknown-linux-gnufilc0-0.9.8.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/yw1yqbz4wrfrh1n58zsdwmk7dy5yv755-olsrd-x86_64-unknown-linux-gnufilc0-0.9.8
       Last 25 log lines:
       > clang-20: warning: optimization flag '-funit-at-a-time' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-finline-limit=350' is not supported [-Wignored-optimization-argument]
       > [CC] src/unix/ifnet.c
       > clang-20: warning: optimization flag '-finline-functions-called-once' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-funit-at-a-time' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-finline-limit=350' is not supported [-Wignored-optimization-argument]
       > [CC] src/unix/log.c
       > clang-20: warning: optimization flag '-finline-functions-called-once' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-funit-at-a-time' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-finline-limit=350' is not supported [-Wignored-optimization-argument]
       > [CC] src/unix/misc.c
       > clang-20: warning: optimization flag '-finline-functions-called-once' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-funit-at-a-time' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-finline-limit=350' is not supported [-Wignored-optimization-argument]
       > [CC] src/cfgparser/olsrd_conf.c
       > clang-20: warning: optimization flag '-finline-functions-called-once' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-funit-at-a-time' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-finline-limit=350' is not supported [-Wignored-optimization-argument]
       > [CC] src/cfgparser/olsrd_conf_checksum.c
       > clang-20: warning: optimization flag '-finline-functions-called-once' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-funit-at-a-time' is not supported [-Wignored-optimization-argument]
       > clang-20: warning: optimization flag '-finline-limit=350' is not supported [-Wignored-optimization-argument]
       > [BISON] src/cfgparser/oparse.c
       > /nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: bison: command not found
       > make: *** [src/cfgparser/local.mk:76: src/cfgparser/oparse.c] Error 127
       For full logs, run:
         nix log /nix/store/sv8w4rx9sdxkzn9c1knim8rnl1h44zrg-olsrd-x86_64-unknown-linux-gnufilc0-0.9.8.drv
oberon-risc-emu-unstable-2020-08-18
error: build of '/nix/store/2c384wxp6azakiln260897vfmwv7jp21-oberon-risc-emu-x86_64-unknown-linux-gnufilc0-unstable-2020-08-18.drv^*', '/nix/store/2r8viwd383vhf3zpxqrm3dssbyxma6bn-ocrad-x86_64-unknown-linux-gnufilc0-0.27.drv^*', '/nix/store/4bzhsmkdym07zdqhlax32fp34a6pchna-odyssey-x86_64-unknown-linux-gnufilc0-1.3.drv^*', '/nix/store/73kfknmh9skd28zplq39dmky43is89sj-offrss-x86_64-unknown-linux-gnufilc0-1.3.drv^*', '/nix/store/fy9zh066h5mcnj1qgps5k8m9v380p6c6-ogmtools-x86_64-unknown-linux-gnufilc0-1.5.drv^*', '/nix/store/fyiwqyglmy4lsr80i5cgkmg8hqy1b03b-obj-magic-x86_64-unknown-linux-gnufilc0-0.5-unstable-2020-09-20.drv^*', '/nix/store/jxhgzsa7q51bh4s52xq5vqxaxszb6qg5-obuild-x86_64-unknown-linux-gnufilc0-0.1.11.drv^*', '/nix/store/pfp8vki42vxjl4ghbrgvdxrzi8k4mnv7-octodns-1.11.0-x86_64-unknown-linux-gnufilc0.drv^*', '/nix/store/qbhz11ciy0ci8mz9vxy9k5pgq8psywwz-nyx-2.1.0-x86_64-unknown-linux-gnufilc0.drv^*', '/nix/store/s7d1h6an71v5bx673ywvig906zhy4k26-oatpp-x86_64-unknown-linux-gnufilc0-1.3.1.drv^*', '/nix/store/sgr8k34ynd1c44d9pclbx21i504sig4w-oils-for-unix-x86_64-unknown-linux-gnufilc0-0.29.0.drv^*', '/nix/store/sv8w4rx9sdxkzn9c1knim8rnl1h44zrg-olsrd-x86_64-unknown-linux-gnufilc0-0.9.8.drv^*' failed

End of log