stacks-2.68
86 | DNASeq4& operator= (DNASeq4&& other) {l_ = other.l_; v_ = move(other.v_); other.clear(); return *this;}| ^
| std::
In file included from src/BamI.cc:6:
In file included from src/BamI.h:36:
src/stacks.h:270:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
src/stacks.h:270:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
src/BamI.cc:157:9: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
157 | hdr(move(header)),
| ^
| std::
5 warnings generated.
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/catalog_utils.o src/catalog_utils.cc
In file included from src/catalog_utils.cc:32:
In file included from src/catalog_utils.h:30:
In file included from src/stacks.h:40:
src/DNASeq4.h:80:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
80 | DNASeq4(DNASeq4&& other) noexcept : l_(other.l_), v_(move(other.v_)) {other.clear();}| ^
| std::
src/DNASeq4.h:86:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
86 | DNASeq4& operator= (DNASeq4&& other) {l_ = other.l_; v_ = move(other.v_); other.clear(); return *this;}| ^
| std::
In file included from src/catalog_utils.cc:32:
In file included from src/catalog_utils.h:30:
src/stacks.h:270:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
src/stacks.h:270:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
In file included from src/catalog_utils.cc:32:
In file included from src/catalog_utils.h:31:
In file included from src/locus.h:34:
src/Alignment.h:59:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
59 | AlnRead(Read&& r, Cigar&& c) : Read(move(r)), cigar(move(c)) {}| ^
| std::
src/Alignment.h:59:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
59 | AlnRead(Read&& r, Cigar&& c) : Read(move(r)), cigar(move(c)) {}| ^
| std::
src/Alignment.h:223:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
223 | return AlnRead(Read(move(seq), move(name)), move(cig));
| ^
| std::
src/Alignment.h:223:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
223 | return AlnRead(Read(move(seq), move(name)), move(cig));
| ^
| std::
src/Alignment.h:223:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
223 | return AlnRead(Read(move(seq), move(name)), move(cig));
| ^
| std::
In file included from src/catalog_utils.cc:32:
In file included from src/catalog_utils.h:31:
src/locus.h:180:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
180 | SRead(Read&& r, size_t spl) : Read(move(r)), sample(spl) {}| ^
| std::
src/locus.h:186:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
186 | SAlnRead(AlnRead&& r, size_t spl) : AlnRead(move(r)), sample(spl) {}| ^
| std::
src/locus.h:187:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
187 | SAlnRead(Read&& r, Cigar&& c, size_t spl) : AlnRead(move(r), move(c)), sample(spl) {}| ^
| std::
src/locus.h:187:66: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
187 | SAlnRead(Read&& r, Cigar&& c, size_t spl) : AlnRead(move(r), move(c)), sample(spl) {}| ^
| std::
src/locus.h:216:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
216 | void add(SRead&& r) {reads_.push_back(move(r));}| ^
| std::
src/locus.h:217:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
217 | void add_pe(SRead&& r) {pe_reads_.push_back(move(r));}| ^
| std::
src/locus.h:245:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
245 | void ref(DNASeq4&& s) {ref_ = move(s);}| ^
| std::
src/locus.h:308:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
308 | reads_.push_back(move(r));
| ^
| std::
In file included from src/catalog_utils.cc:32:
In file included from src/catalog_utils.h:32:
src/PopMap.h:452:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
452 | ++cloc->alleles[move(hap)];
| ^
| std::
src/PopMap.h:454:33: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
454 | ++cloc->alleles[move(hap)];
| ^
| std::
19 warnings generated.
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/cmb.o src/cmb.cc
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/constants.o src/constants.cc
stdman-2024.07.05
Linking
Done building stdman
Success
→ installPhase
install flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash install
Installing from /build/source/man to /nix/store/8zppcn2b19xb1257c27x8qgga89rvyvv-stdman-x86_64-unknown-linux-gnufilc0-2024.07.05/share/man/man3
stacks-2.68
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/DNANSeq.o src/DNANSeq.cc
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/DNASeq4.o src/DNASeq4.cc
In file included from src/DNASeq4.cc:1:
src/DNASeq4.h:80:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
80 | DNASeq4(DNASeq4&& other) noexcept : l_(other.l_), v_(move(other.v_)) {other.clear();}| ^
| std::
src/DNASeq4.h:86:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
86 | DNASeq4& operator= (DNASeq4&& other) {l_ = other.l_; v_ = move(other.v_); other.clear(); return *this;}| ^
| std::
src/DNASeq4.cc:96:13: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
96 | *this = move(seq);
| ^
| std::
3 warnings generated.
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/DNASeq.o src/DNASeq.cc
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/gzFasta.o src/gzFasta.cc
stdman-2024.07.05
Done; it's advised to run 'sudo mandb' (GNU) or 'sudo makewhatis' (BSD) now.
→ fixupPhase
shrinking RPATHs of ELF executables and libraries in /nix/store/8zppcn2b19xb1257c27x8qgga89rvyvv-stdman-x86_64-unknown-linux-gnufilc0-2024.07.05
checking for references to /build/ in /nix/store/8zppcn2b19xb1257c27x8qgga89rvyvv-stdman-x86_64-unknown-linux-gnufilc0-2024.07.05...
stacks-2.68
In file included from src/gzFasta.cc:21:
In file included from src/gzFasta.h:24:
In file included from src/input.h:34:
In file included from src/stacks.h:40:
src/DNASeq4.h:80:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
80 | DNASeq4(DNASeq4&& other) noexcept : l_(other.l_), v_(move(other.v_)) {other.clear();}| ^
| std::
src/DNASeq4.h:86:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
86 | DNASeq4& operator= (DNASeq4&& other) {l_ = other.l_; v_ = move(other.v_); other.clear(); return *this;}| ^
| std::
In file included from src/gzFasta.cc:21:
In file included from src/gzFasta.h:24:
In file included from src/input.h:34:
src/stacks.h:270:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
src/stacks.h:270:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
4 warnings generated.
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/input.o src/input.cc
stdman-2024.07.05
gzipping man pages under /nix/store/8zppcn2b19xb1257c27x8qgga89rvyvv-stdman-x86_64-unknown-linux-gnufilc0-2024.07.05/share/man/
patching script interpreter paths in /nix/store/8zppcn2b19xb1257c27x8qgga89rvyvv-stdman-x86_64-unknown-linux-gnufilc0-2024.07.05
stdoutisatty-1.0
Build started
→ unpackPhase
unpacking source archive /nix/store/jxncr0dnkkfk983myw380bkkflnaxfz8-source
source root is source
→ patchPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
fixing cmake files...
cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/share/doc/stdoutisatty -DCMAKE_INSTALL_INFODIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/include -DCMAKE_INSTALL_SBINDIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/lib -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_STRIP=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/strip -DCMAKE_RANLIB=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/ranlib -DCMAKE_AR=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/ar -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++ -DCMAKE_INSTALL_PREFIX=/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0 -DCMAKE_C_FLAGS:STRING=-DLIB_FILE=\'\"/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/lib/libstdoutisatty.so\"\' -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_HOST_SYSTEM_NAME=Linux -DCMAKE_HOST_SYSTEM_PROCESSOR=x86_64 -DCMAKE_CROSSCOMPILING_EMULATOR=env
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- The C compiler identification is Clang 20.1.8
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Configuring done (0.2s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
BUILD_TESTING
CMAKE_CXX_COMPILER
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_USE_PACKAGE_REGISTRY
CMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY
CMAKE_INSTALL_BINDIR
CMAKE_INSTALL_DOCDIR
CMAKE_INSTALL_INCLUDEDIR
CMAKE_INSTALL_INFODIR
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LIBEXECDIR
CMAKE_INSTALL_LOCALEDIR
CMAKE_INSTALL_MANDIR
CMAKE_INSTALL_SBINDIR
-- Build files have been written to: /build/source/build
cmake: enabled parallel building
cmake: enabled parallel installing
→ buildPhase
build flags: -j6 SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
[ 50%] Building C object CMakeFiles/stdoutisatty.dir/stdoutisatty.c.o
[ 50%] Building C object CMakeFiles/libstdoutisatty.dir/libstdoutisatty.c.o
In file included from <built-in>:418:
<command line>:2:9: warning: 'LIB_FILE' macro redefined [-Wmacro-redefined]
2 | #define LIB_FILE "/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/lib/libstdoutisatty.so"
| ^
<command line>:1:9: note: previous definition is here
1 | #define LIB_FILE "libstdoutisatty.so"
| ^
1 warning generated.
[ 75%] Linking C executable stdoutisatty
In file included from <built-in>:416:
<command line>:3:9: warning: 'LIB_FILE' macro redefined [-Wmacro-redefined]
3 | #define LIB_FILE "/nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/lib/libstdoutisatty.so"
| ^
<command line>:1:9: note: previous definition is here
1 | #define LIB_FILE "libstdoutisatty.so"
| ^
1 warning generated.
[100%] Linking C shared library libstdoutisatty.so
[100%] Built target stdoutisatty
[100%] Built target libstdoutisatty
→ installPhase
install flags: -j6 SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash install
[ 50%] Built target libstdoutisatty
[100%] Built target stdoutisatty
Install the project...
-- Install configuration: "Release"
-- Installing: /nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/bin/stdoutisatty
-- Installing: /nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/lib/libstdoutisatty.so
→ fixupPhase
shrinking RPATHs of ELF executables and libraries in /nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0
shrinking /nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/bin/stdoutisatty
shrinking /nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/lib/libstdoutisatty.so
checking for references to /build/ in /nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0...
patching script interpreter paths in /nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0
stripping (with command strip and flags -S -p) in /nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/lib /nix/store/zqrgzycmdknfhhww6kakwf2fqmi3lwrr-stdoutisatty-x86_64-unknown-linux-gnufilc0-1.0/bin
stduuid-1.2.3
Build started
→ unpackPhase
unpacking source archive /nix/store/5kln5n38xvqcahfa7amklmihkklg4a4x-source
source root is source
→ patchPhase
applying patch /nix/store/p9ajkp3hkqxnqgsnzfbd96w69qr4rk8z-b02c70c0a4bef2c82152503e13c9a67d6631b13d.patch
patching file CMakeLists.txt
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
fixing cmake files...
cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/share/doc/stduuid -DCMAKE_INSTALL_INFODIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/include -DCMAKE_INSTALL_SBINDIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3/lib -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_STRIP=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/strip -DCMAKE_RANLIB=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/ranlib -DCMAKE_AR=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/ar -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++ -DCMAKE_INSTALL_PREFIX=/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3 -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_HOST_SYSTEM_NAME=Linux -DCMAKE_HOST_SYSTEM_PROCESSOR=x86_64 -DCMAKE_CROSSCOMPILING_EMULATOR=env
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- The CXX compiler identification is Clang 20.1.8
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- ** Clang flags: -fexceptions;-g;-Wall
-- Configuring done (0.2s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
BUILD_TESTING
CMAKE_C_COMPILER
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_USE_PACKAGE_REGISTRY
CMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY
CMAKE_INSTALL_BINDIR
CMAKE_INSTALL_DOCDIR
CMAKE_INSTALL_INCLUDEDIR
CMAKE_INSTALL_INFODIR
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LIBEXECDIR
CMAKE_INSTALL_LOCALEDIR
CMAKE_INSTALL_MANDIR
CMAKE_INSTALL_SBINDIR
CMAKE_POLICY_DEFAULT_CMP0025
-- Build files have been written to: /build/source/build
cmake: enabled parallel building
cmake: enabled parallel installing
→ buildPhase
build flags: -j6 SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
[ 50%] Building CXX object test/CMakeFiles/test_stduuid.dir/main.cpp.o
[ 50%] Building CXX object test/CMakeFiles/test_stduuid.dir/test_uuid.cpp.o
[ 75%] Building CXX object test/CMakeFiles/test_stduuid.dir/test_generators.cpp.o
stacks-2.68
In file included from src/input.cc:25:
In file included from src/input.h:34:
In file included from src/stacks.h:40:
src/DNASeq4.h:80:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
80 | DNASeq4(DNASeq4&& other) noexcept : l_(other.l_), v_(move(other.v_)) {other.clear();}| ^
| std::
src/DNASeq4.h:86:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
86 | DNASeq4& operator= (DNASeq4&& other) {l_ = other.l_; v_ = move(other.v_); other.clear(); return *this;}| ^
| std::
In file included from src/input.cc:25:
In file included from src/input.h:34:
src/stacks.h:270:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
src/stacks.h:270:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
4 warnings generated.
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/kmers.o src/kmers.cc
In file included from src/kmers.cc:24:
In file included from src/kmers.h:35:
In file included from src/stacks.h:40:
src/DNASeq4.h:80:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
80 | DNASeq4(DNASeq4&& other) noexcept : l_(other.l_), v_(move(other.v_)) {other.clear();}| ^
| std::
src/DNASeq4.h:86:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
86 | DNASeq4& operator= (DNASeq4&& other) {l_ = other.l_; v_ = move(other.v_); other.clear(); return *this;}| ^
| std::
In file included from src/kmers.cc:24:
In file included from src/kmers.h:35:
src/stacks.h:270:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
src/stacks.h:270:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
In file included from src/kmers.cc:24:
In file included from src/kmers.h:36:
In file included from src/locus.h:34:
src/Alignment.h:59:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
59 | AlnRead(Read&& r, Cigar&& c) : Read(move(r)), cigar(move(c)) {}| ^
| std::
src/Alignment.h:59:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
59 | AlnRead(Read&& r, Cigar&& c) : Read(move(r)), cigar(move(c)) {}| ^
| std::
src/Alignment.h:223:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
223 | return AlnRead(Read(move(seq), move(name)), move(cig));
| ^
| std::
src/Alignment.h:223:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
223 | return AlnRead(Read(move(seq), move(name)), move(cig));
| ^
| std::
src/Alignment.h:223:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
223 | return AlnRead(Read(move(seq), move(name)), move(cig));
| ^
| std::
In file included from src/kmers.cc:24:
In file included from src/kmers.h:36:
src/locus.h:180:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
180 | SRead(Read&& r, size_t spl) : Read(move(r)), sample(spl) {}| ^
| std::
src/locus.h:186:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
186 | SAlnRead(AlnRead&& r, size_t spl) : AlnRead(move(r)), sample(spl) {}| ^
| std::
src/locus.h:187:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
187 | SAlnRead(Read&& r, Cigar&& c, size_t spl) : AlnRead(move(r), move(c)), sample(spl) {}| ^
| std::
src/locus.h:187:66: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
187 | SAlnRead(Read&& r, Cigar&& c, size_t spl) : AlnRead(move(r), move(c)), sample(spl) {}| ^
| std::
src/locus.h:216:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
216 | void add(SRead&& r) {reads_.push_back(move(r));}| ^
| std::
src/locus.h:217:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
217 | void add_pe(SRead&& r) {pe_reads_.push_back(move(r));}| ^
| std::
src/locus.h:245:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
245 | void ref(DNASeq4&& s) {ref_ = move(s);}| ^
| std::
src/locus.h:308:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
308 | reads_.push_back(move(r));
| ^
| std::
In file included from src/kmers.cc:24:
In file included from src/kmers.h:37:
src/mstack.h:92:18: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
92 | , utags (move(o.utags))
| ^
| std::
src/mstack.h:93:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
93 | , remtags (move(o.remtags))
| ^
| std::
src/mstack.h:95:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
95 | , dist (move(o.dist))
| ^
| std::
src/mstack.h:96:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
96 | , alns (move(o.alns))
| ^
| std::
src/mstack.h:99:16: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
99 | , loc (move(o.loc))
| ^
| std::
src/mstack.h:100:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
100 | , snps (move(o.snps))
| ^
| std::
src/mstack.h:101:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
101 | , alleles (move(o.alleles))
| ^
| std::
src/mstack.h:102:17: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
102 | , gaps (move(o.gaps))
| ^
| std::
25 warnings generated.
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/locus.o src/locus.cc
In file included from src/locus.cc:24:
In file included from src/locus.h:32:
In file included from src/stacks.h:40:
src/DNASeq4.h:80:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
80 | DNASeq4(DNASeq4&& other) noexcept : l_(other.l_), v_(move(other.v_)) {other.clear();}| ^
| std::
src/DNASeq4.h:86:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
86 | DNASeq4& operator= (DNASeq4&& other) {l_ = other.l_; v_ = move(other.v_); other.clear(); return *this;}| ^
| std::
In file included from src/locus.cc:24:
In file included from src/locus.h:32:
src/stacks.h:270:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
src/stacks.h:270:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
In file included from src/locus.cc:24:
In file included from src/locus.h:34:
src/Alignment.h:59:41: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
59 | AlnRead(Read&& r, Cigar&& c) : Read(move(r)), cigar(move(c)) {}| ^
| std::
src/Alignment.h:59:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
59 | AlnRead(Read&& r, Cigar&& c) : Read(move(r)), cigar(move(c)) {}| ^
| std::
src/Alignment.h:223:25: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
223 | return AlnRead(Read(move(seq), move(name)), move(cig));
| ^
| std::
src/Alignment.h:223:36: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
223 | return AlnRead(Read(move(seq), move(name)), move(cig));
| ^
| std::
src/Alignment.h:223:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
223 | return AlnRead(Read(move(seq), move(name)), move(cig));
| ^
| std::
In file included from src/locus.cc:24:
src/locus.h:180:40: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
180 | SRead(Read&& r, size_t spl) : Read(move(r)), sample(spl) {}| ^
| std::
src/locus.h:186:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
186 | SAlnRead(AlnRead&& r, size_t spl) : AlnRead(move(r)), sample(spl) {}| ^
| std::
src/locus.h:187:57: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
187 | SAlnRead(Read&& r, Cigar&& c, size_t spl) : AlnRead(move(r), move(c)), sample(spl) {}| ^
| std::
src/locus.h:187:66: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
187 | SAlnRead(Read&& r, Cigar&& c, size_t spl) : AlnRead(move(r), move(c)), sample(spl) {}| ^
| std::
src/locus.h:216:43: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
216 | void add(SRead&& r) {reads_.push_back(move(r));}| ^
| std::
src/locus.h:217:49: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
217 | void add_pe(SRead&& r) {pe_reads_.push_back(move(r));}| ^
| std::
src/locus.h:245:35: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
245 | void ref(DNASeq4&& s) {ref_ = move(s);}| ^
| std::
src/locus.h:308:22: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
308 | reads_.push_back(move(r));
| ^
| std::
src/locus.cc:519:51: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
519 | *r1 = SAlnRead(AlnRead::merger_of(move(*r1), move(*r2)), r1->sample);
| ^
| std::
src/locus.cc:519:62: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
519 | *r1 = SAlnRead(AlnRead::merger_of(move(*r1), move(*r2)), r1->sample);
| ^
| std::
src/locus.cc:668:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
668 | CLocAlnSet merged (move(left));
| ^
| std::
src/locus.cc:691:24: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
691 | merged.add(move(r));
| ^
| std::
src/locus.cc:727:20: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
727 | merged.add(move(r));
| ^
| std::
22 warnings generated.
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/log_utils.o src/log_utils.cc
clang++ -DHAVE_CONFIG_H -I. -I./htslib -g -O2 -c -o src/MetaPopInfo.o src/MetaPopInfo.cc
In file included from src/MetaPopInfo.cc:10:
In file included from src/input.h:34:
In file included from src/stacks.h:40:
src/DNASeq4.h:80:58: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
80 | DNASeq4(DNASeq4&& other) noexcept : l_(other.l_), v_(move(other.v_)) {other.clear();}| ^
| std::
src/DNASeq4.h:86:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
86 | DNASeq4& operator= (DNASeq4&& other) {l_ = other.l_; v_ = move(other.v_); other.clear(); return *this;}| ^
| std::
In file included from src/MetaPopInfo.cc:10:
In file included from src/input.h:34:
src/stacks.h:270:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
src/stacks.h:270:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
270 | : seq(move(s)), name(move(n))
| ^
| std::
src/MetaPopInfo.cc:427:30: error: non-constant-expression cannot be narrowed from type 'size_t' (aka 'unsigned long') to 'const int' in initializer list [-Wc++11-narrowing-const-reference]
427 | pop_indexes.insert( {i, {pops_[i].first_sample, pops_[i].last_sample}} );| ^
4 warnings and 1 error generated.
make[2]: *** [Makefile:1105: src/MetaPopInfo.o] Error 1
make[2]: Leaving directory '/build/stacks-2.68'
make[1]: *** [Makefile:1122: all-recursive] Error 1
make[1]: Leaving directory '/build/stacks-2.68'
make: *** [Makefile:762: all] Error 2
stenc-2.0.0
Build started
→ unpackPhase
unpacking source archive /nix/store/ajilnzij47nrlcfxy482bfhm4j6cb4ma-source
source root is source
→ patchPhase
→ autoreconfPhase
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force
autoreconf: configure.ac: tracing
autoreconf: configure.ac: not using Libtool
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: running: /nix/store/v3l2zqz13i63nzkd2nrqps0y2i74pr10-autoconf-2.72/bin/autoconf --force
autoreconf: running: /nix/store/v3l2zqz13i63nzkd2nrqps0y2i74pr10-autoconf-2.72/bin/autoheader --force
autoreconf: running: automake --add-missing --copy --force-missing
configure.ac:10: installing './compile'
configure.ac:6: installing './install-sh'
configure.ac:6: installing './missing'
src/Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
autoreconf: './install-sh' is updated
autoreconf: Leaving directory '.'
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
patching script interpreter paths in ./configure
./configure: interpreter directive changed from "#! /bin/sh" to "/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/sh"
configure flags: --disable-dependency-tracking --prefix=/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0 --bindir=/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0/bin --sbindir=/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0/sbin --includedir=/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0/include --mandir=/nix/store/gygwkay6g17rl6vv8b5sz536hpycvwd1-stenc-x86_64-unknown-linux-gnufilc0-2.0.0-man/share/man --infodir=/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0/share/info --docdir=/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0/share/doc/stenc --libdir=/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0/lib --libexecdir=/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0/libexec --localedir=/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0/share/locale --build=x86_64-unknown-linux-gnu --host=x86_64-unknown-linux-gnufilc0
checking for a BSD-compatible install... /nix/store/rry6qingvsrqmc7ll7jgaqpybcbdgf5v-coreutils-9.7/bin/install -c
checking whether build environment is sane... yes
checking for x86_64-unknown-linux-gnufilc0-strip... strip
checking for a race-free mkdir -p... /nix/store/rry6qingvsrqmc7ll7jgaqpybcbdgf5v-coreutils-9.7/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
./configure: line 3257: ]: command not found
checking whether make supports the include directive... yes (GNU style)
checking for x86_64-unknown-linux-gnufilc0-gcc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang accepts -g... yes
checking for clang option to enable C11 features... none needed
checking whether clang understands -c and -o together... yes
checking dependency style of clang... none
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for arpa/inet.h... yes
checking for netinet/in.h... yes
checking whether the compiler supports GNU C++... yes
checking whether clang++ accepts -g... yes
checking for clang++ option to enable C++11 features... none needed
checking dependency style of clang++... none
checking whether to output raw SCSI messages... no
checking your OS... Linux
checking whether to build with static libgcc... no
checking for pandoc... yes
checking pkg-config is at least version 0.9.0... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating man/Makefile
config.status: creating tests/Makefile
config.status: creating bash-completion/Makefile
config.status: creating config.h
config.status: executing depfiles commands
→ buildPhase
build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
make all-recursive
make[1]: Entering directory '/build/source'
Making all in src
make[2]: Entering directory '/build/source/src'
clang++ -DHAVE_CONFIG_H -I. -I.. -std=c++17 -g -O2 -c -o main.o main.cpp
clang++ -DHAVE_CONFIG_H -I. -I.. -std=c++17 -g -O2 -c -o scsiencrypt.o scsiencrypt.cpp
clang++ -std=c++17 -g -O2 -o stenc main.o scsiencrypt.o
make[2]: Leaving directory '/build/source/src'
Making all in man
make[2]: Entering directory '/build/source/man'
pandoc --standalone --to man stenc.rst -o stenc.1
make[2]: Leaving directory '/build/source/man'
Making all in tests
make[2]: Entering directory '/build/source/tests'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/build/source/tests'
Making all in bash-completion
make[2]: Entering directory '/build/source/bash-completion'
make[2]: Nothing to be done for 'all'.
make[2]: Leaving directory '/build/source/bash-completion'
make[2]: Entering directory '/build/source'
make[2]: Leaving directory '/build/source'
make[1]: Leaving directory '/build/source'
→ checkPhase
check flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash VERBOSE=y check
Making check in src
make[1]: Entering directory '/build/source/src'
make[1]: Nothing to be done for 'check'.
make[1]: Leaving directory '/build/source/src'
Making check in man
make[1]: Entering directory '/build/source/man'
make[1]: Nothing to be done for 'check'.
make[1]: Leaving directory '/build/source/man'
Making check in tests
make[1]: Entering directory '/build/source/tests'
make scsi output
make[2]: Entering directory '/build/source/tests'
clang++ -DHAVE_CONFIG_H -I. -I.. -std=c++17 -I../src -g -O2 -c -o scsi.o scsi.cpp
stduuid-1.2.3
[100%] Linking CXX executable test_stduuid
CMakeFiles/test_stduuid.dir/main.cpp.o:main.cpp:function pizlonatedFI4792_nextafter:(.text+0x220456): error: undefined reference to 'pizlonated_nextafter'
CMakeFiles/test_stduuid.dir/main.cpp.o:main.cpp:function pizlonatedFI3195_nextafterf:(.text+0x220547): error: undefined reference to 'pizlonated_nextafterf'
clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [test/CMakeFiles/test_stduuid.dir/build.make:132: test/test_stduuid] Error 1
make[1]: *** [CMakeFiles/Makefile2:106: test/CMakeFiles/test_stduuid.dir/all] Error 2
make: *** [Makefile:146: all] Error 2
stepreduce-unstable-2020-04-30
Build started
→ unpackPhase
unpacking source archive /nix/store/6hh65vhbf5gss752bwwlrzg6jhdrm93i-source
source root is source
→ patchPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
no configure script, doing nothing
→ buildPhase
build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
c++ -O3 -std=c++11 -lstdc++ -o stepreduce stepreduce.cpp
→ installPhase
→ fixupPhase
shrinking RPATHs of ELF executables and libraries in /nix/store/vlkbpaj0yvjsg4fcggb970b49ykfq1ra-stepreduce-x86_64-unknown-linux-gnufilc0-unstable-2020-04-30
shrinking /nix/store/vlkbpaj0yvjsg4fcggb970b49ykfq1ra-stepreduce-x86_64-unknown-linux-gnufilc0-unstable-2020-04-30/bin/stepreduce
checking for references to /build/ in /nix/store/vlkbpaj0yvjsg4fcggb970b49ykfq1ra-stepreduce-x86_64-unknown-linux-gnufilc0-unstable-2020-04-30...
patching script interpreter paths in /nix/store/vlkbpaj0yvjsg4fcggb970b49ykfq1ra-stepreduce-x86_64-unknown-linux-gnufilc0-unstable-2020-04-30
stripping (with command strip and flags -S -p) in /nix/store/vlkbpaj0yvjsg4fcggb970b49ykfq1ra-stepreduce-x86_64-unknown-linux-gnufilc0-unstable-2020-04-30/bin
stfl-0.24-unstable-2021-11-29
Build started
→ unpackPhase
unpacking source archive /nix/store/hq32f6qn37aibryl6m1lyaqbr3zpjjgf-source
source root is source
→ patchPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
no configure script, doing nothing
→ buildPhase
build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash CC=cc
cc -I. -MM *.c > Makefile.deps_new
cc -I. -MM widgets/*.c | sed 's,^wt_[^ ]*\.o: ,widgets/&,' >> Makefile.deps_new
mv -f Makefile.deps_new Makefile.deps
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o public.o public.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o base.o base.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o parser.o parser.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o dump.o dump.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o style.o style.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o binding.o binding.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o iconv.o iconv.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o widgets/wt_box.o widgets/wt_box.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o widgets/wt_checkbox.o widgets/wt_checkbox.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o widgets/wt_input.o widgets/wt_input.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o widgets/wt_label.o widgets/wt_label.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o widgets/wt_list.o widgets/wt_list.c
widgets/wt_list.c:30:6: warning: variable 'i' set but not used [-Wunused-but-set-variable]
30 | int i;
| ^
1 warning generated.
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o widgets/wt_table.o widgets/wt_table.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o widgets/wt_textedit.o widgets/wt_textedit.c
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o widgets/wt_textview.o widgets/wt_textview.c
cc -shared -Wl,-soname,libstfl.so.0 -o libstfl.so.0.24 -lncursesw public.o base.o parser.o dump.o style.o binding.o iconv.o widgets/wt_box.o widgets/wt_checkbox.o widgets/wt_input.o widgets/wt_label.o widgets/wt_list.o widgets/wt_table.o widgets/wt_textedit.o widgets/wt_textview.o
rm -f libstfl.a
ar qc libstfl.a public.o base.o parser.o dump.o style.o binding.o iconv.o widgets/wt_box.o widgets/wt_checkbox.o widgets/wt_input.o widgets/wt_label.o widgets/wt_list.o widgets/wt_table.o widgets/wt_textedit.o widgets/wt_textview.o
ranlib libstfl.a
cc -I. -Wall -Os -ggdb -D_GNU_SOURCE -fPIC -c -o example.o example.c
cc example.o libstfl.a -lncursesw -o example
→ installPhase
sed 's,@VERSION@,0.24,g' < stfl.pc.in | sed 's,@PREFIX@,"",g' > stfl.pc
mkdir -p /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29""/lib/pkgconfig
mkdir -p /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29""/include
install -m 644 libstfl.a /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29""/lib
install -m 644 stfl.h /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29""/include/
install -m 644 stfl.pc /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29""/lib/pkgconfig/
install -m 644 libstfl.so.0.24 /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29""/lib
ln -fs libstfl.so.0.24 /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29""/lib/libstfl.so
→ fixupPhase
shrinking RPATHs of ELF executables and libraries in /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29
shrinking /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29/lib/libstfl.so.0.24
checking for references to /build/ in /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29...
patching script interpreter paths in /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29
stripping (with command strip and flags -S -p) in /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29/lib
rewriting symlink /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29/lib/libstfl.so.0 to be relative to /nix/store/4mjsnd0ny2719ixf13n6c523a8j66b55-stfl-x86_64-unknown-linux-gnufilc0-0.24-unstable-2021-11-29
stl-to-obj-0.3
Build started
→ unpackPhase
unpacking source archive /nix/store/g4k0jva22kn6ycd7rph1wrzpw9mly5is-source
source root is source
→ patchPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
fixing cmake files...
cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/share/doc/stl2obj -DCMAKE_INSTALL_INFODIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/include -DCMAKE_INSTALL_SBINDIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3/lib -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_STRIP=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/strip -DCMAKE_RANLIB=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/ranlib -DCMAKE_AR=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/ar -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++ -DCMAKE_INSTALL_PREFIX=/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3 -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_HOST_SYSTEM_NAME=Linux -DCMAKE_HOST_SYSTEM_PROCESSOR=x86_64 -DCMAKE_CROSSCOMPILING_EMULATOR=env
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.10 will be removed from a future version of
CMake.
Update the VERSION argument <min> value. Or, use the <min>...<max> syntax
to tell CMake that the project requires at least <min> but has been updated
to work with policies introduced by <max> or earlier.
-- The C compiler identification is Clang 20.1.8
-- The CXX compiler identification is Clang 20.1.8
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done (0.3s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
BUILD_TESTING
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_USE_PACKAGE_REGISTRY
CMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY
CMAKE_INSTALL_DOCDIR
CMAKE_INSTALL_INCLUDEDIR
CMAKE_INSTALL_INFODIR
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LIBEXECDIR
CMAKE_INSTALL_LOCALEDIR
CMAKE_INSTALL_MANDIR
CMAKE_INSTALL_SBINDIR
CMAKE_POLICY_DEFAULT_CMP0025
-- Build files have been written to: /build/source/build
cmake: enabled parallel building
cmake: enabled parallel installing
→ buildPhase
build flags: -j6 SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
[ 21%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/convert.cpp.o
[ 21%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/mode.cpp.o
[ 21%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/obj_to_stl/ObjModel.cpp.o
[ 42%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/obj_to_stl/Converter.cpp.o
[ 42%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/obj_to_stl/ObjReader.cpp.o
[ 42%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/main.cpp.o
[ 50%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/obj_to_stl/StlModel.cpp.o
[ 57%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/obj_to_stl/StlWriter.cpp.o
In file included from /build/source/stl2obj/src/convert.cpp:3:
/build/source/stl2obj/src/stl_to_obj/vectornd.h:89:31: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
89 | static_assert(DIM == 3);
| ^
| , ""
/build/source/stl2obj/src/stl_to_obj/vectornd.h:101:31: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
101 | static_assert(DIM == 2);
| ^
| , ""
In file included from /build/source/stl2obj/src/convert.cpp:4:
In file included from /build/source/stl2obj/src/stl_to_obj/geometry.h:7:
/build/source/stl2obj/src/stl_to_obj/geombase.h:14:38: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
14 | static_cast<T*>(this)->visit(move(v));
| ^
| std::
/build/source/stl2obj/src/stl_to_obj/geometry.h:21:5: note: in instantiation of member function 'GeomBase<Geometry>::visit' requested here
21 | Geometry() {}| ^
3 warnings generated.
[ 64%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/obj_to_stl/convert_file.cpp.o
[ 71%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/paths.cpp.o
[ 78%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/progress.cpp.o
[ 85%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/stl_to_obj/exportobj.cpp.o
[ 92%] Building CXX object CMakeFiles/stl2obj.dir/stl2obj/src/stl_to_obj/importstl.cpp.o
In file included from /build/source/stl2obj/src/stl_to_obj/exportobj.cpp:4:
In file included from /build/source/stl2obj/src/stl_to_obj/exportobj.h:8:
In file included from /build/source/stl2obj/src/stl_to_obj/geometry.h:6:
/build/source/stl2obj/src/stl_to_obj/vectornd.h:89:31: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
89 | static_assert(DIM == 3);
| ^
| , ""
/build/source/stl2obj/src/stl_to_obj/vectornd.h:101:31: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
101 | static_assert(DIM == 2);
| ^
| , ""
In file included from /build/source/stl2obj/src/stl_to_obj/exportobj.cpp:4:
In file included from /build/source/stl2obj/src/stl_to_obj/exportobj.h:7:
In file included from /build/source/stl2obj/src/stl_to_obj/visitor.h:5:
/build/source/stl2obj/src/stl_to_obj/geombase.h:14:38: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
14 | static_cast<T*>(this)->visit(move(v));
| ^
| std::
/build/source/stl2obj/src/stl_to_obj/geometry.h:21:5: note: in instantiation of member function 'GeomBase<Geometry>::visit' requested here
21 | Geometry() {}| ^
3 warnings generated.
In file included from /build/source/stl2obj/src/stl_to_obj/importstl.cpp:7:
In file included from /build/source/stl2obj/src/stl_to_obj/importstl.h:8:
In file included from /build/source/stl2obj/src/stl_to_obj/geometry.h:6:
/build/source/stl2obj/src/stl_to_obj/vectornd.h:89:31: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
89 | static_assert(DIM == 3);
| ^
| , ""
/build/source/stl2obj/src/stl_to_obj/vectornd.h:101:31: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
101 | static_assert(DIM == 2);
| ^
| , ""
In file included from /build/source/stl2obj/src/stl_to_obj/importstl.cpp:7:
In file included from /build/source/stl2obj/src/stl_to_obj/importstl.h:7:
In file included from /build/source/stl2obj/src/stl_to_obj/visitor.h:5:
/build/source/stl2obj/src/stl_to_obj/geombase.h:14:38: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
14 | static_cast<T*>(this)->visit(move(v));
| ^
| std::
/build/source/stl2obj/src/stl_to_obj/geometry.h:21:5: note: in instantiation of member function 'GeomBase<Geometry>::visit' requested here
21 | Geometry() {}| ^
3 warnings generated.
[100%] Linking CXX executable stl2obj
CMakeFiles/stl2obj.dir/stl2obj/src/obj_to_stl/Converter.cpp.o:Converter.cpp:function pizlonatedFI269_sqrtf:(.text+0x185b1): error: undefined reference to 'pizlonated_sqrtf'
CMakeFiles/stl2obj.dir/stl2obj/src/stl_to_obj/importstl.cpp.o:importstl.cpp:function pizlonatedFI403_sqrt:(.text+0x6e71): error: undefined reference to 'pizlonated_sqrt'
clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [CMakeFiles/stl2obj.dir/build.make:292: stl2obj] Error 1
make[1]: *** [CMakeFiles/Makefile2:87: CMakeFiles/stl2obj.dir/all] Error 2
make: *** [Makefile:136: all] Error 2
stlink-tool-0-unstable-2020-06-10
Build started
→ unpackPhase
unpacking source archive /nix/store/hdhk1db368lkc09k7b5gv5943xmz40q3-source
source root is source
→ patchPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
no configure script, doing nothing
→ buildPhase
build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: pkg-config: command not found
/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: pkg-config: command not found
clang -Wall -Wextra -Werror -o src/main.o -c src/main.c
src/main.c:25:10: fatal error: 'libusb.h' file not found
25 | #include <libusb.h>
| ^~~~~~~~~~
1 error generated.
make: *** [Makefile:7: src/main.o] Error 1
stlink-1.8.0
Build started
→ unpackPhase
unpacking source archive /nix/store/mihkjs4x57ksk5vr7nfdby6kmnhrcxq4-source
source root is source
→ patchPhase
applying patch /nix/store/1nb2pg5dsfn6vzhcv0190rx21zzcablh-calloc-argument-order.patch
patching file src/stlink-lib/chipid.c
→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
fixing cmake files...
cmake flags: -DCMAKE_FIND_USE_SYSTEM_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_BUILD_TYPE=Release -DBUILD_TESTING=OFF -DCMAKE_INSTALL_LOCALEDIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/share/locale -DCMAKE_INSTALL_LIBEXECDIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/libexec -DCMAKE_INSTALL_LIBDIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/lib -DCMAKE_INSTALL_DOCDIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/share/doc/stlink -DCMAKE_INSTALL_INFODIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/share/info -DCMAKE_INSTALL_MANDIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/share/man -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/include -DCMAKE_INSTALL_SBINDIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/sbin -DCMAKE_INSTALL_BINDIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/bin -DCMAKE_INSTALL_NAME_DIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/lib -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_STRIP=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/strip -DCMAKE_RANLIB=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/ranlib -DCMAKE_AR=/nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/ar -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++ -DCMAKE_INSTALL_PREFIX=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0 -DSTLINK_MODPROBED_DIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/etc/modprobe.d -DSTLINK_UDEV_RULES_DIR=/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0/lib/udev/rules.d -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_HOST_SYSTEM_NAME=Linux -DCMAKE_HOST_SYSTEM_PROCESSOR=x86_64 -DCMAKE_CROSSCOMPILING_EMULATOR=env
-- The C compiler identification is Clang 20.1.8
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /nix/store/x2i9jyjvpnngn0yq5kbdlrw4gg43wzm3-filc-cc-wrapper-/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Could NOT find Git (missing: GIT_EXECUTABLE)
-- Git and/or repository not found.
-- Try to detect version from "/build/source/.version" file instead...
-- Checking for OS_NAME: Linux
-- Performing Test C_SUPPORTS_WALL
-- Performing Test C_SUPPORTS_WALL - Success
-- Performing Test C_SUPPORTS_WEXTRA
-- Performing Test C_SUPPORTS_WEXTRA - Success
-- Performing Test C_SUPPORTS_WSHADOW
-- Performing Test C_SUPPORTS_WSHADOW - Success
-- Performing Test C_SUPPORTS_O
-- Performing Test C_SUPPORTS_O - Success
-- Performing Test C_SUPPORTS_D_FORTIFY_SOURCE_2
-- Performing Test C_SUPPORTS_D_FORTIFY_SOURCE_2 - Success
-- Performing Test C_SUPPORTS_FSTRICT_ALIASING
-- Performing Test C_SUPPORTS_FSTRICT_ALIASING - Success
-- Performing Test C_SUPPORTS_WUNDEF
-- Performing Test C_SUPPORTS_WUNDEF - Success
-- Performing Test C_SUPPORTS_WFORMAT
-- Performing Test C_SUPPORTS_WFORMAT - Success
-- Performing Test C_SUPPORTS_WFORMAT_SECURITY
-- Performing Test C_SUPPORTS_WFORMAT_SECURITY - Success
-- Performing Test C_SUPPORTS_WMAYBE_UNINITIALIZED
-- Performing Test C_SUPPORTS_WMAYBE_UNINITIALIZED - Failed
-- Performing Test C_SUPPORTS_WMISSING_VARIABLE_DECLARATIONS
-- Performing Test C_SUPPORTS_WMISSING_VARIABLE_DECLARATIONS - Success
-- Performing Test C_SUPPORTS_WSHORTEN_64_TO_32
-- Performing Test C_SUPPORTS_WSHORTEN_64_TO_32 - Success
-- Performing Test C_SUPPORTS_WIMPLICIT_FUNCTION_DECLARATION
-- Performing Test C_SUPPORTS_WIMPLICIT_FUNCTION_DECLARATION - Success
-- Performing Test C_SUPPORTS_WREDUNDANT_DECLS
-- Performing Test C_SUPPORTS_WREDUNDANT_DECLS - Success
-- Performing Test C_SUPPORTS_FPIC
-- Performing Test C_SUPPORTS_FPIC - Success
-- Performing Test C_SUPPORTS_WERROR
-- Performing Test C_SUPPORTS_WERROR - Success
-- Found libusb: /nix/store/sqihw8jipyvx0080898sallpd7b3aphs-libusb-x86_64-unknown-linux-gnufilc0-1.0.28/lib/libusb-1.0.so
-- Looking for __stack_chk_fail in ssp
-- Looking for __stack_chk_fail in ssp - not found
-- Looking for sys/mman.h
-- Looking for sys/mman.h - found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for dirent.h
-- Looking for dirent.h - found
-- STLINK_LIB_SHARED: stlink-shared
-- PROJECT_VERSION_MAJOR: 1
-- VERSION: 1.8.0
-- STLINK_LIB_STATIC: stlink-static
-- PROJECT_VERSION_MAJOR: 1
-- VERSION: 1.8.0
-- Manpage generation disabled
-- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE)
-- GTK3 not found!
-- Configuring done (2.0s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
BUILD_TESTING
CMAKE_CXX_COMPILER
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_POLICY_DEFAULT_CMP0025
-- Build files have been written to: /build/source/build
cmake: enabled parallel building
cmake: enabled parallel installing
→ buildPhase
build flags: -j6 SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
[ 4%] Building C object CMakeFiles/stlink-shared.dir/src/stlink-lib/chipid.c.o
[ 4%] Building C object CMakeFiles/stlink-shared.dir/src/stlink-lib/calculate.c.o
[ 6%] Building C object CMakeFiles/stlink-shared.dir/src/stlink-lib/common_flash.c.o
[ 8%] Building C object CMakeFiles/stlink-static.dir/src/stlink-lib/chipid.c.o
[ 12%] Building C object CMakeFiles/stlink-static.dir/src/stlink-lib/calculate.c.o
[ 12%] Building C object CMakeFiles/stlink-shared.dir/src/stlink-lib/common.c.o
/build/source/src/stlink-lib/chipid.c:227:12: error: implicit conversion loses integer precision: 'unsigned long' to 'uint32_t' (aka 'unsigned int') [-Werror,-Wshorten-64-to-32]
227 | nl = strlen(dir->d_name);
| ~ ^~~~~~~~~~~~~~~~~~~
1 error generated.
/build/source/src/stlink-lib/chipid.c:227:12: error: implicit conversion loses integer precision: 'unsigned long' to 'uint32_t' (aka 'unsigned int') [-Werror,-Wshorten-64-to-32]
227 | nl = strlen(dir->d_name);
| ~ ^~~~~~~~~~~~~~~~~~~
1 error generated.
make[2]: *** [CMakeFiles/stlink-static.dir/build.make:93: CMakeFiles/stlink-static.dir/src/stlink-lib/chipid.c.o] Error 1
make[2]: *** [CMakeFiles/stlink-shared.dir/build.make:93: CMakeFiles/stlink-shared.dir/src/stlink-lib/chipid.c.o] Error 1
make[2]: *** Waiting for unfinished jobs....
make[2]: *** Waiting for unfinished jobs....
make[1]: *** [CMakeFiles/Makefile2:320: CMakeFiles/stlink-static.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
/build/source/src/stlink-lib/common.c:916:20: error: implicit conversion loses integer precision: 'unsigned long' to 'uint32_t' (aka 'unsigned int') [-Werror,-Wshorten-64-to-32]
916 | uint32_t l = strlen(line);
| ~ ^~~~~~~~~~~~
1 error generated.
make[2]: *** [CMakeFiles/stlink-shared.dir/build.make:121: CMakeFiles/stlink-shared.dir/src/stlink-lib/common.c.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:288: CMakeFiles/stlink-shared.dir/all] Error 2
make: *** [Makefile:156: all] Error 2
stm32flash-0.7
Build started
→ unpackPhase
unpacking source archive /nix/store/rd9hla6ipz6m3hnj05kbah8ihznmkgm3-stm32flash-0.7.tar.gz
source root is stm32flash-0.7
setting SOURCE_DATE_EPOCH to timestamp 1648384333 of file "stm32flash-0.7/parsers/Makefile"
→ patchPhase
→ updateAutotoolsGnuConfigScriptsPhase
Updating Autotools / GNU config script to a newer upstream version: ./config.sub
Updating Autotools / GNU config script to a newer upstream version: ./config.guess
→ updateAutotoolsGnuConfigScriptsPhase
Updating Autotools / GNU config script to a newer upstream version: ./config.sub
Updating Autotools / GNU config script to a newer upstream version: ./config.guess
→ configurePhase
Fil-C: adapting libtool symbol probes in configure
fixing libtool script ./ltmain.sh
./configure
patching script interpreter paths in ./configure
./configure: interpreter directive changed from "#! /bin/sh" to "/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/sh"
configure flags: --disable-static --disable-dependency-tracking --prefix=/nix/store/01k2vd7kwm93hfn60h4m09619syymrrn-stm32flash-x86_64-unknown-linux-gnufilc0-0.7 --build=x86_64-unknown-linux-gnu --host=x86_64-unknown-linux-gnufilc0
checking for a BSD-compatible install... /nix/store/rry6qingvsrqmc7ll7jgaqpybcbdgf5v-coreutils-9.7/bin/install -c
checking whether build environment is sane... yes
checking for x86_64-unknown-linux-gnufilc0-strip... strip
checking for a thread-safe mkdir -p... /nix/store/rry6qingvsrqmc7ll7jgaqpybcbdgf5v-coreutils-9.7/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for x86_64-unknown-linux-gnufilc0-gcc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... yes
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking whether clang understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of clang... none
checking for x86_64-unknown-linux-gnufilc0-ar... ar
checking the archiver (ar) interface... ar
checking dependency style of clang... none
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnufilc0
checking how to print strings... printf
checking for a sed that does not truncate output... /nix/store/4rpiqv9yr2pw5094v4wc33ijkqjpm9sa-gnused-4.9/bin/sed
checking for grep that handles long lines and -e... /nix/store/l2wvwyg680h0v2la18hz3yiznxy2naqw-gnugrep-3.11/bin/grep
checking for egrep... /nix/store/l2wvwyg680h0v2la18hz3yiznxy2naqw-gnugrep-3.11/bin/grep -E
checking for fgrep... /nix/store/l2wvwyg680h0v2la18hz3yiznxy2naqw-gnugrep-3.11/bin/grep -F
checking for ld used by clang... ld
checking if the linker (ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... nm
checking the name lister (nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 4718592
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnufilc0 format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for ld option to reload object files... -r
checking for x86_64-unknown-linux-gnufilc0-objdump... objdump
checking how to recognize dependent libraries... (cached) pass_all
checking for x86_64-unknown-linux-gnufilc0-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-unknown-linux-gnufilc0-ar... (cached) ar
checking for archiver @FILE support... @
checking for x86_64-unknown-linux-gnufilc0-strip... (cached) strip
checking for x86_64-unknown-linux-gnufilc0-ranlib... ranlib
checking command to parse nm output from clang object... ok
checking for sysroot... no
checking for a working dd... /nix/store/rry6qingvsrqmc7ll7jgaqpybcbdgf5v-coreutils-9.7/bin/dd
checking how to truncate binary pipes... /nix/store/rry6qingvsrqmc7ll7jgaqpybcbdgf5v-coreutils-9.7/bin/dd bs=4096 count=1
checking for x86_64-unknown-linux-gnufilc0-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... clang -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if clang supports -fno-rtti -fno-exceptions... yes
checking for clang option to produce PIC... -fPIC -DPIC
checking if clang PIC flag -fPIC -DPIC works... yes
checking if clang static flag -static works... no
checking if clang supports -c -o file.o... yes
checking if clang supports -c -o file.o... (cached) yes
checking whether the clang linker (ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating parsers/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
→ buildPhase
build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash CC=cc
Making all in parsers
make[1]: Entering directory '/build/stm32flash-0.7/parsers'
/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash ../libtool --tag=CC --mode=compile cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g -O2 -c -o binary.lo binary.c
libtool: compile: cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" "-DPACKAGE_STRING=\"stm32flash 0.7\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g -O2 -c binary.c -fPIC -DPIC -o .libs/binary.o
/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash ../libtool --tag=CC --mode=compile cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g -O2 -c -o hex.lo hex.c
libtool: compile: cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" "-DPACKAGE_STRING=\"stm32flash 0.7\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g -O2 -c hex.c -fPIC -DPIC -o .libs/hex.o
/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash ../libtool --tag=CC --mode=link cc -g -O2 -module -avoid-version -o parsers.la binary.lo hex.lo
libtool: link: ar cr .libs/parsers.a .libs/binary.o .libs/hex.o
libtool: link: ranlib .libs/parsers.a
libtool: link: ( cd ".libs" && rm -f "parsers.la" && ln -s "../parsers.la" "parsers.la" )
make[1]: Leaving directory '/build/stm32flash-0.7/parsers'
make[1]: Entering directory '/build/stm32flash-0.7'
cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g3 -Os -Wall -Wextra -I./parsers -g -O2 -c -o stm32flash-dev_table.o `test -f 'dev_table.c' || echo './'`dev_table.c
cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g3 -Os -Wall -Wextra -I./parsers -g -O2 -c -o stm32flash-i2c.o `test -f 'i2c.c' || echo './'`i2c.c
cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g3 -Os -Wall -Wextra -I./parsers -g -O2 -c -o stm32flash-init.o `test -f 'init.c' || echo './'`init.c
cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g3 -Os -Wall -Wextra -I./parsers -g -O2 -c -o stm32flash-main.o `test -f 'main.c' || echo './'`main.c
cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g3 -Os -Wall -Wextra -I./parsers -g -O2 -c -o stm32flash-port.o `test -f 'port.c' || echo './'`port.c
cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g3 -Os -Wall -Wextra -I./parsers -g -O2 -c -o stm32flash-serial_common.o `test -f 'serial_common.c' || echo './'`serial_common.c
cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g3 -Os -Wall -Wextra -I./parsers -g -O2 -c -o stm32flash-serial_platform.o `test -f 'serial_platform.c' || echo './'`serial_platform.c
cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g3 -Os -Wall -Wextra -I./parsers -g -O2 -c -o stm32flash-stm32.o `test -f 'stm32.c' || echo './'`stm32.c
cc -DPACKAGE_NAME=\"stm32flash\" -DPACKAGE_TARNAME=\"stm32flash\" -DPACKAGE_VERSION=\"0.7\" -DPACKAGE_STRING=\"stm32flash\ 0.7\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"stm32flash\" -DVERSION=\"0.7\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g3 -Os -Wall -Wextra -I./parsers -g -O2 -c -o stm32flash-utils.o `test -f 'utils.c' || echo './'`utils.c
/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash ./libtool --tag=CC --mode=link cc -g3 -Os -Wall -Wextra -I./parsers -g -O2 -Wall -g3 -Wextra -o stm32flash stm32flash-dev_table.o stm32flash-i2c.o stm32flash-init.o stm32flash-main.o stm32flash-port.o stm32flash-serial_common.o stm32flash-serial_platform.o stm32flash-stm32.o stm32flash-utils.o ./parsers/parsers.la
libtool: link: cc -g3 -Os -Wall -Wextra -I./parsers -g -O2 -Wall -g3 -Wextra -o stm32flash stm32flash-dev_table.o stm32flash-i2c.o stm32flash-init.o stm32flash-main.o stm32flash-port.o stm32flash-serial_common.o stm32flash-serial_platform.o stm32flash-stm32.o stm32flash-utils.o ./parsers/.libs/parsers.a
make[1]: Leaving directory '/build/stm32flash-0.7'
→ installPhase
mkdir: created directory '/nix/store/01k2vd7kwm93hfn60h4m09619syymrrn-stm32flash-x86_64-unknown-linux-gnufilc0-0.7'
mkdir: created directory '/nix/store/01k2vd7kwm93hfn60h4m09619syymrrn-stm32flash-x86_64-unknown-linux-gnufilc0-0.7/bin/'
→ fixupPhase
shrinking RPATHs of ELF executables and libraries in /nix/store/01k2vd7kwm93hfn60h4m09619syymrrn-stm32flash-x86_64-unknown-linux-gnufilc0-0.7
shrinking /nix/store/01k2vd7kwm93hfn60h4m09619syymrrn-stm32flash-x86_64-unknown-linux-gnufilc0-0.7/bin/stm32flash
checking for references to /build/ in /nix/store/01k2vd7kwm93hfn60h4m09619syymrrn-stm32flash-x86_64-unknown-linux-gnufilc0-0.7...
patching script interpreter paths in /nix/store/01k2vd7kwm93hfn60h4m09619syymrrn-stm32flash-x86_64-unknown-linux-gnufilc0-0.7
stripping (with command strip and flags -S -p) in /nix/store/01k2vd7kwm93hfn60h4m09619syymrrn-stm32flash-x86_64-unknown-linux-gnufilc0-0.7/bin
stm8flash-2022-03-27
Build started
→ unpackPhase
unpacking source archive /nix/store/5pjy9538p3sqdmlvy8qa2fv717a7rkch-source
source root is source
→ patchPhase
substituteStream() in derivation stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27: WARNING: '--replace' is deprecated, use --replace-{fail,warn,quiet}. (file 'Makefile')→ updateAutotoolsGnuConfigScriptsPhase
→ updateAutotoolsGnuConfigScriptsPhase
→ configurePhase
no configure script, doing nothing
→ buildPhase
build flags: -j6 SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash DESTDIR=/nix/store/20wfdlcdmy1a3kgpcj2h5svg8kv28fw4-stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` -c -o stlink.o stlink.c
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` -c -o stlinkv2.o stlinkv2.c
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` -c -o espstlink.o espstlink.c
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` -c -o main.o main.c
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` -c -o byte_utils.o byte_utils.c
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` -c -o ihex.o ihex.c
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` -c -o srec.o srec.c
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` -c -o stm8.o stm8.c
In file included from espstlink.c:28:
./libespstlink.h:37:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
37 | espstlink_error_t *espstlink_get_last_error();
| ^
| void
1 warning generated.
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` -c -o libespstlink.o libespstlink.c
In file included from stlinkv2.c:10:
In file included from ./stlink.h:10:
In file included from ./pgm.h:11:
./libespstlink.h:37:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
37 | espstlink_error_t *espstlink_get_last_error();
| ^
| void
1 warning generated.
In file included from stlink.c:17:
In file included from ./pgm.h:11:
./libespstlink.h:37:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
37 | espstlink_error_t *espstlink_get_last_error();
| ^
| void
1 warning generated.
In file included from libespstlink.c:18:
./libespstlink.h:37:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
37 | espstlink_error_t *espstlink_get_last_error();
| ^
| void
libespstlink.c:34:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
34 | espstlink_error_t *espstlink_get_last_error() { return &error; }| ^
| void
2 warnings generated.
In file included from main.c:14:
In file included from ./pgm.h:11:
./libespstlink.h:37:44: warning: a function declaration without a prototype is deprecated in all versions of C [-Wstrict-prototypes]
37 | espstlink_error_t *espstlink_get_last_error();
| ^
| void
1 warning generated.
clang -g -O0 -DDEBUG=0 --std=gnu99 --pedantic -Wall `x86_64-unknown-linux-gnufilc0-pkg-config --cflags libusb-1.0` stlink.o stlinkv2.o espstlink.o main.o byte_utils.o ihex.o srec.o stm8.o libespstlink.o `x86_64-unknown-linux-gnufilc0-pkg-config --libs libusb-1.0` -o stm8flash
→ installPhase
install flags: -j6 SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash DESTDIR=/nix/store/20wfdlcdmy1a3kgpcj2h5svg8kv28fw4-stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27 install
mkdir -p /nix/store/20wfdlcdmy1a3kgpcj2h5svg8kv28fw4-stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27/bin/
cp stm8flash /nix/store/20wfdlcdmy1a3kgpcj2h5svg8kv28fw4-stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27/bin/
→ fixupPhase
shrinking RPATHs of ELF executables and libraries in /nix/store/20wfdlcdmy1a3kgpcj2h5svg8kv28fw4-stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27
shrinking /nix/store/20wfdlcdmy1a3kgpcj2h5svg8kv28fw4-stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27/bin/stm8flash
checking for references to /build/ in /nix/store/20wfdlcdmy1a3kgpcj2h5svg8kv28fw4-stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27...
patching script interpreter paths in /nix/store/20wfdlcdmy1a3kgpcj2h5svg8kv28fw4-stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27
stripping (with command strip and flags -S -p) in /nix/store/20wfdlcdmy1a3kgpcj2h5svg8kv28fw4-stm8flash-x86_64-unknown-linux-gnufilc0-2022-03-27/bin
stenc-2.0.0
clang++ -DHAVE_CONFIG_H -I. -I.. -std=c++17 -I../src -g -O2 -c -o ../src/scsiencrypt.o ../src/scsiencrypt.cpp
clang++ -g -O2 -o scsi scsi.o ../src/scsiencrypt.o
scsi.o:scsi.cpp:function pizlonatedFI4792_nextafter:(.text+0x25b5b6): error: undefined reference to 'pizlonated_nextafter'
scsi.o:scsi.cpp:function pizlonatedFI3195_nextafterf:(.text+0x25b697): error: undefined reference to 'pizlonated_nextafterf'
clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [Makefile:540: scsi] Error 1
make[2]: Leaving directory '/build/source/tests'
make[1]: *** [Makefile:830: check-am] Error 2
make[1]: Leaving directory '/build/source/tests'
make: *** [Makefile:364: check-recursive] Error 1
st-0.9.2
error: Cannot build '/nix/store/jfks3232lb7vn35yspakacm4bsc29fqr-st-x86_64-unknown-linux-gnufilc0-0.9.2.drv'.
Reason: builder failed with exit code 2.
Output paths:
/nix/store/0cx23in3h59b0acdk33l3rxzm4hxkr22-st-x86_64-unknown-linux-gnufilc0-0.9.2
/nix/store/13k589flqxwgm1cmwrr8s5dxnwg9y4ry-st-x86_64-unknown-linux-gnufilc0-0.9.2-terminfo
Last 25 log lines:
> clang -o st st.o x.o -L/usr/X11R6/lib -lm -lrt -lX11 -lutil -lXft `pkg-config --libs fontconfig` `pkg-config --libs freetype2`
> /nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: pkg-config: command not found
> /nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: pkg-config: command not found
> x.o:x.c:function pizlonatedFI17023078_FcFontSort:(.text+0x24e1d): error: undefined reference to 'pizlonated_FcFontSort'
> x.o:x.c:function pizlonatedFI1073_FcPatternDuplicate:(.text+0x24f61): error: undefined reference to 'pizlonated_FcPatternDuplicate'
> x.o:x.c:function pizlonatedFI9_FcCharSetCreate:(.text+0x25017): error: undefined reference to 'pizlonated_FcCharSetCreate'
> x.o:x.c:function pizlonatedFI2529_FcCharSetAddChar:(.text+0x250b7): error: undefined reference to 'pizlonated_FcCharSetAddChar'
> x.o:x.c:function pizlonatedFI141514_FcPatternAddCharSet:(.text+0x251ab): error: undefined reference to 'pizlonated_FcPatternAddCharSet'
> x.o:x.c:function pizlonatedFI28863_FcPatternAddBool:(.text+0x252b2): error: undefined reference to 'pizlonated_FcPatternAddBool'
> x.o:x.c:function pizlonatedFI28863_FcConfigSubstitute:(.text+0x253c2): error: undefined reference to 'pizlonated_FcConfigSubstitute'
> x.o:x.c:function pizlonatedFI1065_FcDefaultSubstitute:(.text+0x254c1): error: undefined reference to 'pizlonated_FcDefaultSubstitute'
> x.o:x.c:function pizlonatedFI17023078_FcFontSetMatch:(.text+0x2556d): error: undefined reference to 'pizlonated_FcFontSetMatch'
> x.o:x.c:function pizlonatedFI1065_FcPatternDestroy:(.text+0x259f1): error: undefined reference to 'pizlonated_FcPatternDestroy'
> x.o:x.c:function pizlonatedFI1065_FcCharSetDestroy:(.text+0x25a91): error: undefined reference to 'pizlonated_FcCharSetDestroy'
> x.o:x.c:function pizlonatedFI2_FcInit:(.text+0x26f47): error: undefined reference to 'pizlonated_FcInit'
> x.o:x.c:function pizlonatedFI1073_FcNameParse:(.text+0x29281): error: undefined reference to 'pizlonated_FcNameParse'
> x.o:x.c:function pizlonatedFI12770_FcPatternDel:(.text+0x2934b): error: undefined reference to 'pizlonated_FcPatternDel'
> x.o:x.c:function pizlonatedFI61049_FcPatternAddDouble:(.text+0x29435): error: undefined reference to 'pizlonated_FcPatternAddDouble'
> x.o:x.c:function pizlonatedFI1445047_FcPatternGetDouble:(.text+0x2954b): error: undefined reference to 'pizlonated_FcPatternGetDouble'
> x.o:x.c:function pizlonatedFI28863_FcPatternAddInteger:(.text+0x29672): error: undefined reference to 'pizlonated_FcPatternAddInteger'
> x.o:x.c:function pizlonatedFI141521_FcFontMatch:(.text+0x2a30b): error: undefined reference to 'pizlonated_FcFontMatch'
> x.o:x.c:function pizlonatedFI1445047_FcPatternGetInteger:(.text+0x2a41b): error: undefined reference to 'pizlonated_FcPatternGetInteger'
> x.o:x.c:function pizlonatedFI1065_FcFontSetDestroy:(.text+0x2bb81): error: undefined reference to 'pizlonated_FcFontSetDestroy'
> clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
> make: *** [Makefile:24: st] Error 1
For full logs, run:
nix log /nix/store/jfks3232lb7vn35yspakacm4bsc29fqr-st-x86_64-unknown-linux-gnufilc0-0.9.2.drvsta-unstable-2021-11-30
error: Cannot build '/nix/store/3syhw1gpjv0yc45njsdfhczx3i9kfkfa-sta-x86_64-unknown-linux-gnufilc0-unstable-2021-11-30.drv'.
Reason: 1 dependency failed.
Output paths:
/nix/store/3p2chqnp2avh73bzab209gw7bs3dpi02-sta-x86_64-unknown-linux-gnufilc0-unstable-2021-11-30stacks-2.68
error: Cannot build '/nix/store/ysdhln6wjkqxxz0yl8i7vdp6j6x6wm1s-stacks-x86_64-unknown-linux-gnufilc0-2.68.drv'.
Reason: builder failed with exit code 2.
Output paths:
/nix/store/3za1g3sn7xvryz36gi8zs8dwwhgwhif7-stacks-x86_64-unknown-linux-gnufilc0-2.68
Last 25 log lines:
> | ^
> | std::
> src/DNASeq4.h:86:63: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
> 86 | DNASeq4& operator= (DNASeq4&& other) {l_ = other.l_; v_ = move(other.v_); other.clear(); return *this;}
> | ^
> | std::
> In file included from src/MetaPopInfo.cc:10:
> In file included from src/input.h:34:
> src/stacks.h:270:15: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
> 270 | : seq(move(s)), name(move(n))
> | ^
> | std::
> src/stacks.h:270:30: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
> 270 | : seq(move(s)), name(move(n))
> | ^
> | std::
> src/MetaPopInfo.cc:427:30: error: non-constant-expression cannot be narrowed from type 'size_t' (aka 'unsigned long') to 'const int' in initializer list [-Wc++11-narrowing-const-reference]
> 427 | pop_indexes.insert( {i, {pops_[i].first_sample, pops_[i].last_sample}} );
> | ^
> 4 warnings and 1 error generated.
> make[2]: *** [Makefile:1105: src/MetaPopInfo.o] Error 1
> make[2]: Leaving directory '/build/stacks-2.68'
> make[1]: *** [Makefile:1122: all-recursive] Error 1
> make[1]: Leaving directory '/build/stacks-2.68'
> make: *** [Makefile:762: all] Error 2
For full logs, run:
nix log /nix/store/ysdhln6wjkqxxz0yl8i7vdp6j6x6wm1s-stacks-x86_64-unknown-linux-gnufilc0-2.68.drvstalonetray-0.8.5
error: Cannot build '/nix/store/rh9bkmvrvbp60iyfj8zmafsfi930bxy3-stalonetray-x86_64-unknown-linux-gnufilc0-0.8.5.drv'.
Reason: builder failed with exit code 1.
Output paths:
/nix/store/4np8f3dsl57hw9wgyfx73xr2yjh645qd-stalonetray-x86_64-unknown-linux-gnufilc0-0.8.5
Last 25 log lines:
> checking for strings.h... yes
> checking for sys/stat.h... yes
> checking for sys/types.h... yes
> checking for unistd.h... yes
> checking for wchar.h... yes
> checking for minix/config.h... no
> checking whether it is safe to define __EXTENSIONS__... yes
> checking whether _XOPEN_SOURCE should be defined... no
> checking for ctype.h... yes
> checking for errno.h... yes
> checking for signal.h... yes
> checking for stdio.h... (cached) yes
> checking for stdlib.h... (cached) yes
> checking for string.h... (cached) yes
> checking for time.h... yes
> checking for unistd.h... (cached) yes
> checking for libgen.h... yes
> checking how to run the C preprocessor... clang -E
> checking for X... no
> X11 libraries/headers could not be found.
> If they are definetly installed, use
> --x-includes and --x-libraries to set the paths.
>
> Aborting
>
For full logs, run:
nix log /nix/store/rh9bkmvrvbp60iyfj8zmafsfi930bxy3-stalonetray-x86_64-unknown-linux-gnufilc0-0.8.5.drvstar-2.7.10b
error: Cannot build '/nix/store/ljn5r3j5jki9m3g4xyfx4v75bpkp21kz-star-x86_64-unknown-linux-gnufilc0-2.7.10b.drv'.
Reason: builder failed with exit code 2.
Output paths:
/nix/store/2cc82xi68vg0v2gbgk7ayr2p2qmi54w1-star-x86_64-unknown-linux-gnufilc0-2.7.10b
Last 25 log lines:
> | ^~~~~~~
> 1 error generated.
> In file included from stitchWindowAligns.cpp:1:
> In file included from ./stitchWindowAligns.h:1:
> ./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
> 24 | #include <omp.h>
> | ^~~~~~~
> 1 error generated.
> In file included from streamFuns.cpp:1:
> In file included from ./streamFuns.h:4:
> In file included from ./Parameters.h:4:
> ./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
> 24 | #include <omp.h>
> | ^~~~~~~
> 1 error generated.
> In file included from twoPassRunPass1.cpp:1:
> In file included from ./twoPassRunPass1.h:4:
> In file included from ./Parameters.h:4:
> ./IncludeDefine.h:24:10: fatal error: 'omp.h' file not found
> 24 | #include <omp.h>
> | ^~~~~~~
> 1 error generated.
> error: invalid argument '-std=c++11' not allowed with 'C'
> Makefile:138: Depend.list: No such file or directory
> make: *** [Makefile:137: Depend.list] Error 1
For full logs, run:
nix log /nix/store/ljn5r3j5jki9m3g4xyfx4v75bpkp21kz-star-x86_64-unknown-linux-gnufilc0-2.7.10b.drvstduuid-1.2.3
error: Cannot build '/nix/store/yv4rmm2izy14zb74ipfz8vyj4q35xas4-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3.drv'.
Reason: builder failed with exit code 2.
Output paths:
/nix/store/qvhjn64b2jkxryr9askldvyqdn9mlm0s-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3
Last 25 log lines:
> CMAKE_INSTALL_INCLUDEDIR
> CMAKE_INSTALL_INFODIR
> CMAKE_INSTALL_LIBDIR
> CMAKE_INSTALL_LIBEXECDIR
> CMAKE_INSTALL_LOCALEDIR
> CMAKE_INSTALL_MANDIR
> CMAKE_INSTALL_SBINDIR
> CMAKE_POLICY_DEFAULT_CMP0025
>
>
> -- Build files have been written to: /build/source/build
> cmake: enabled parallel building
> cmake: enabled parallel installing
> Running phase: buildPhase
> build flags: -j6 SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
> [ 50%] Building CXX object test/CMakeFiles/test_stduuid.dir/main.cpp.o
> [ 50%] Building CXX object test/CMakeFiles/test_stduuid.dir/test_uuid.cpp.o
> [ 75%] Building CXX object test/CMakeFiles/test_stduuid.dir/test_generators.cpp.o
> [100%] Linking CXX executable test_stduuid
> CMakeFiles/test_stduuid.dir/main.cpp.o:main.cpp:function pizlonatedFI4792_nextafter:(.text+0x220456): error: undefined reference to 'pizlonated_nextafter'
> CMakeFiles/test_stduuid.dir/main.cpp.o:main.cpp:function pizlonatedFI3195_nextafterf:(.text+0x220547): error: undefined reference to 'pizlonated_nextafterf'
> clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
> make[2]: *** [test/CMakeFiles/test_stduuid.dir/build.make:132: test/test_stduuid] Error 1
> make[1]: *** [CMakeFiles/Makefile2:106: test/CMakeFiles/test_stduuid.dir/all] Error 2
> make: *** [Makefile:146: all] Error 2
For full logs, run:
nix log /nix/store/yv4rmm2izy14zb74ipfz8vyj4q35xas4-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3.drvstenc-2.0.0
error: Cannot build '/nix/store/q8vl9197c739x4i8n9gsyj5k1cjabwpa-stenc-x86_64-unknown-linux-gnufilc0-2.0.0.drv'.
Reason: builder failed with exit code 2.
Output paths:
/nix/store/gygwkay6g17rl6vv8b5sz536hpycvwd1-stenc-x86_64-unknown-linux-gnufilc0-2.0.0-man
/nix/store/kqckz2gr6g1p6nzv93abna67lym76rl7-stenc-x86_64-unknown-linux-gnufilc0-2.0.0
Last 25 log lines:
> Running phase: checkPhase
> check flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash VERBOSE=y check
> Making check in src
> make[1]: Entering directory '/build/source/src'
> make[1]: Nothing to be done for 'check'.
> make[1]: Leaving directory '/build/source/src'
> Making check in man
> make[1]: Entering directory '/build/source/man'
> make[1]: Nothing to be done for 'check'.
> make[1]: Leaving directory '/build/source/man'
> Making check in tests
> make[1]: Entering directory '/build/source/tests'
> make scsi output
> make[2]: Entering directory '/build/source/tests'
> clang++ -DHAVE_CONFIG_H -I. -I.. -std=c++17 -I../src -g -O2 -c -o scsi.o scsi.cpp
> clang++ -DHAVE_CONFIG_H -I. -I.. -std=c++17 -I../src -g -O2 -c -o ../src/scsiencrypt.o ../src/scsiencrypt.cpp
> clang++ -g -O2 -o scsi scsi.o ../src/scsiencrypt.o
> scsi.o:scsi.cpp:function pizlonatedFI4792_nextafter:(.text+0x25b5b6): error: undefined reference to 'pizlonated_nextafter'
> scsi.o:scsi.cpp:function pizlonatedFI3195_nextafterf:(.text+0x25b697): error: undefined reference to 'pizlonated_nextafterf'
> clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
> make[2]: *** [Makefile:540: scsi] Error 1
> make[2]: Leaving directory '/build/source/tests'
> make[1]: *** [Makefile:830: check-am] Error 2
> make[1]: Leaving directory '/build/source/tests'
> make: *** [Makefile:364: check-recursive] Error 1
For full logs, run:
nix log /nix/store/q8vl9197c739x4i8n9gsyj5k1cjabwpa-stenc-x86_64-unknown-linux-gnufilc0-2.0.0.drvstl-to-obj-0.3
error: Cannot build '/nix/store/44cc1bdpk19phwpaqj0jn2v9b0090bsc-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3.drv'.
Reason: builder failed with exit code 2.
Output paths:
/nix/store/xnsj7xilxqci6fh4a2rv2mb3jgnfyy8d-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3
Last 25 log lines:
> 89 | static_assert(DIM == 3);
> | ^
> | , ""
> /build/source/stl2obj/src/stl_to_obj/vectornd.h:101:31: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
> 101 | static_assert(DIM == 2);
> | ^
> | , ""
> In file included from /build/source/stl2obj/src/stl_to_obj/importstl.cpp:7:
> In file included from /build/source/stl2obj/src/stl_to_obj/importstl.h:7:
> In file included from /build/source/stl2obj/src/stl_to_obj/visitor.h:5:
> /build/source/stl2obj/src/stl_to_obj/geombase.h:14:38: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
> 14 | static_cast<T*>(this)->visit(move(v));
> | ^
> | std::
> /build/source/stl2obj/src/stl_to_obj/geometry.h:21:5: note: in instantiation of member function 'GeomBase<Geometry>::visit' requested here
> 21 | Geometry() {}
> | ^
> 3 warnings generated.
> [100%] Linking CXX executable stl2obj
> CMakeFiles/stl2obj.dir/stl2obj/src/obj_to_stl/Converter.cpp.o:Converter.cpp:function pizlonatedFI269_sqrtf:(.text+0x185b1): error: undefined reference to 'pizlonated_sqrtf'
> CMakeFiles/stl2obj.dir/stl2obj/src/stl_to_obj/importstl.cpp.o:importstl.cpp:function pizlonatedFI403_sqrt:(.text+0x6e71): error: undefined reference to 'pizlonated_sqrt'
> clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
> make[2]: *** [CMakeFiles/stl2obj.dir/build.make:292: stl2obj] Error 1
> make[1]: *** [CMakeFiles/Makefile2:87: CMakeFiles/stl2obj.dir/all] Error 2
> make: *** [Makefile:136: all] Error 2
For full logs, run:
nix log /nix/store/44cc1bdpk19phwpaqj0jn2v9b0090bsc-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3.drvstlink-1.8.0
error: Cannot build '/nix/store/wbbpz52hhlfszj3z1zx9f140lb28yp1d-stlink-x86_64-unknown-linux-gnufilc0-1.8.0.drv'.
Reason: builder failed with exit code 2.
Output paths:
/nix/store/3ry97xzfc100d9bdd2jmbp6kibrfwl8n-stlink-x86_64-unknown-linux-gnufilc0-1.8.0
Last 25 log lines:
> [ 6%] Building C object CMakeFiles/stlink-shared.dir/src/stlink-lib/common_flash.c.o
> [ 8%] Building C object CMakeFiles/stlink-static.dir/src/stlink-lib/chipid.c.o
> [ 12%] Building C object CMakeFiles/stlink-static.dir/src/stlink-lib/calculate.c.o
> [ 12%] Building C object CMakeFiles/stlink-shared.dir/src/stlink-lib/common.c.o
> /build/source/src/stlink-lib/chipid.c:227:12: error: implicit conversion loses integer precision: 'unsigned long' to 'uint32_t' (aka 'unsigned int') [-Werror,-Wshorten-64-to-32]
> 227 | nl = strlen(dir->d_name);
> | ~ ^~~~~~~~~~~~~~~~~~~
> 1 error generated.
> /build/source/src/stlink-lib/chipid.c:227:12: error: implicit conversion loses integer precision: 'unsigned long' to 'uint32_t' (aka 'unsigned int') [-Werror,-Wshorten-64-to-32]
> 227 | nl = strlen(dir->d_name);
> | ~ ^~~~~~~~~~~~~~~~~~~
> 1 error generated.
> make[2]: *** [CMakeFiles/stlink-static.dir/build.make:93: CMakeFiles/stlink-static.dir/src/stlink-lib/chipid.c.o] Error 1
> make[2]: *** [CMakeFiles/stlink-shared.dir/build.make:93: CMakeFiles/stlink-shared.dir/src/stlink-lib/chipid.c.o] Error 1
> make[2]: *** Waiting for unfinished jobs....
> make[2]: *** Waiting for unfinished jobs....
> make[1]: *** [CMakeFiles/Makefile2:320: CMakeFiles/stlink-static.dir/all] Error 2
> make[1]: *** Waiting for unfinished jobs....
> /build/source/src/stlink-lib/common.c:916:20: error: implicit conversion loses integer precision: 'unsigned long' to 'uint32_t' (aka 'unsigned int') [-Werror,-Wshorten-64-to-32]
> 916 | uint32_t l = strlen(line);
> | ~ ^~~~~~~~~~~~
> 1 error generated.
> make[2]: *** [CMakeFiles/stlink-shared.dir/build.make:121: CMakeFiles/stlink-shared.dir/src/stlink-lib/common.c.o] Error 1
> make[1]: *** [CMakeFiles/Makefile2:288: CMakeFiles/stlink-shared.dir/all] Error 2
> make: *** [Makefile:156: all] Error 2
For full logs, run:
nix log /nix/store/wbbpz52hhlfszj3z1zx9f140lb28yp1d-stlink-x86_64-unknown-linux-gnufilc0-1.8.0.drvstlink-tool-0-unstable-2020-06-10
error: Cannot build '/nix/store/k5krp5p0zvcd4yszgd7v1v2cbsanxkn6-stlink-tool-x86_64-unknown-linux-gnufilc0-0-unstable-2020-06-10.drv'.
Reason: builder failed with exit code 2.
Output paths:
/nix/store/m20yimq2204i1fkacyhvw9v2vg1g02bq-stlink-tool-x86_64-unknown-linux-gnufilc0-0-unstable-2020-06-10
Last 18 log lines:
> Running phase: unpackPhase
> unpacking source archive /nix/store/hdhk1db368lkc09k7b5gv5943xmz40q3-source
> source root is source
> Running phase: patchPhase
> Running phase: updateAutotoolsGnuConfigScriptsPhase
> Running phase: updateAutotoolsGnuConfigScriptsPhase
> Running phase: configurePhase
> no configure script, doing nothing
> Running phase: buildPhase
> build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
> /nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: pkg-config: command not found
> /nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: pkg-config: command not found
> clang -Wall -Wextra -Werror -o src/main.o -c src/main.c
> src/main.c:25:10: fatal error: 'libusb.h' file not found
> 25 | #include <libusb.h>
> | ^~~~~~~~~~
> 1 error generated.
> make: *** [Makefile:7: src/main.o] Error 1
For full logs, run:
nix log /nix/store/k5krp5p0zvcd4yszgd7v1v2cbsanxkn6-stlink-tool-x86_64-unknown-linux-gnufilc0-0-unstable-2020-06-10.drvsta-unstable-2021-11-30
error: build of '/nix/store/3syhw1gpjv0yc45njsdfhczx3i9kfkfa-sta-x86_64-unknown-linux-gnufilc0-unstable-2021-11-30.drv^*', '/nix/store/44cc1bdpk19phwpaqj0jn2v9b0090bsc-stl-to-obj-x86_64-unknown-linux-gnufilc0-0.3.drv^*', '/nix/store/jfks3232lb7vn35yspakacm4bsc29fqr-st-x86_64-unknown-linux-gnufilc0-0.9.2.drv^*', '/nix/store/k5krp5p0zvcd4yszgd7v1v2cbsanxkn6-stlink-tool-x86_64-unknown-linux-gnufilc0-0-unstable-2020-06-10.drv^*', '/nix/store/ljn5r3j5jki9m3g4xyfx4v75bpkp21kz-star-x86_64-unknown-linux-gnufilc0-2.7.10b.drv^*', '/nix/store/q8vl9197c739x4i8n9gsyj5k1cjabwpa-stenc-x86_64-unknown-linux-gnufilc0-2.0.0.drv^*', '/nix/store/rh9bkmvrvbp60iyfj8zmafsfi930bxy3-stalonetray-x86_64-unknown-linux-gnufilc0-0.8.5.drv^*', '/nix/store/wbbpz52hhlfszj3z1zx9f140lb28yp1d-stlink-x86_64-unknown-linux-gnufilc0-1.8.0.drv^*', '/nix/store/ysdhln6wjkqxxz0yl8i7vdp6j6x6wm1s-stacks-x86_64-unknown-linux-gnufilc0-2.68.drv^*', '/nix/store/yv4rmm2izy14zb74ipfz8vyj4q35xas4-stduuid-x86_64-unknown-linux-gnufilc0-1.2.3.drv^*' failed
End of log