building 'obitools3.dms.column.typed_column.seq' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.dms.column.typed_column.str' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.dms.taxo.taxo' extension

creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.dms.view.view' extension

creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/view.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/dms/view/view.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension

creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.files.linebuffer' extension

creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/files

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/linebuffer.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.files.uncompress' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/uncompress.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/files/uncompress.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.files.universalopener' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/files/universalopener.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/files/universalopener.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.format.fasta' extension

creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/format

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fasta.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/format/fasta.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.format.fastq' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/format/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/fastq.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/format/fastq.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.format.header' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/header.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/format/header.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.format.tab' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/format/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/format/tab.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/format/tab.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign._assemble' extension

creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign._dynamic' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign._freeendgap' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign._freeendgapfm' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign._nws' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_nws.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign._qsassemble' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign._qsrassemble' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign._rassemble' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign._solexapairend' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign.apat_pattern' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.libalign.shifted_ali' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.parsers.embl' extension

creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/embl.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.parsers.embl_genbank_features' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.parsers.fasta' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fasta.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.parsers.fastq' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/fastq.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.parsers.genbank' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/genbank.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.parsers.header' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/header.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/header.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.parsers.ngsfilter' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.parsers.tab' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/tab.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/tab.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.parsers.universal' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/parsers/universal.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/parsers/universal.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.uri.decode' extension

creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/uri/decode.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/uri/decode.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.writers.fasta' extension

creating build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fasta.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/writers/fasta.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.writers.fastq' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/fastq.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/writers/fastq.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

building 'obitools3.writers.tab' extension

clang -O3 -w -I src -I src/libecoPCR -I src/libjson -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -msse2 -w -fPIC

clang -shared -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-bzip2-x86_64-unknown-linux-gnufilc0-1.0.8/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-expat-2.7.1-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-libffi-3.8.0-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-util-linux-minimal-x86_64-unknown-linux-gnufilc0-2.41.1-lib/lib -L/nix/store/wq6z8c63av51wlpy1b8jq2f5zcd0bnw5-libxcrypt-4.4.36-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-mpdecimal-x86_64-unknown-linux-gnufilc0-4.0.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-ncurses-x86_64-unknown-linux-gnufilc0-6.5/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-openssl-x86_64-unknown-linux-gnufilc0-3.5.7/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-sqlite-interactive-x86_64-unknown-linux-gnufilc0-3.48.0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-xz-5.6.2-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-zlib-1.3-x86_64-unknown-linux-gnufilc0/lib -L/nix/store/xqqzjv6ykdcys7pcj6zvk21f5n52xkdk-tzdata-x86_64-unknown-linux-gnufilc0-2025b/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-gdbm-x86_64-unknown-linux-gnufilc0-1.25-lib/lib -L/nix/store/eeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee-readline-x86_64-unknown-linux-gnufilc0-8.2p13/lib -O3 -w -I src -I src/libecoPCR -I src/libjson build/temp.linux-x86_64-cpython-312/build/python/obitools3/writers/tab.o -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0/lib -Wl,--enable-new-dtags,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -lcobitools3 -o build/lib.linux-x86_64-cpython-312/obitools3/writers/tab.cpython-312-x86_64-linux-gnufilc0.so -Wl,-rpath,/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages -L/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/lib/python3.12/site-packages

running build_scripts

creating build/scripts-3.12

copying and adjusting scripts/obi -> build/scripts-3.12

changing mode of build/scripts-3.12/obi from 644 to 755

/nix/store/qgqq0n29krh7snf20wriqqdf8smnjmf1-python3.12-setuptools-78.1.1-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.

!!

        ********************************************************************************

        Please avoid running ``setup.py`` directly.

        Instead, use pypa/build, pypa/installer or other

        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.

        ********************************************************************************

!!

  self.initialize_options()

installing to build/bdist.linux-x86_64/wheel

running install

running install_lib

creating build/bdist.linux-x86_64/wheel

creating build/bdist.linux-x86_64/wheel/obitools3

copying build/lib.linux-x86_64-cpython-312/obitools3/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3

copying build/lib.linux-x86_64-cpython-312/obitools3/version.py -> build/bdist.linux-x86_64/wheel/./obitools3

creating build/bdist.linux-x86_64/wheel/obitools3/apps

copying build/lib.linux-x86_64-cpython-312/obitools3/apps/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/apps

creating build/bdist.linux-x86_64/wheel/obitools3/apps/optiongroups

copying build/lib.linux-x86_64-cpython-312/obitools3/apps/optiongroups/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/apps/optiongroups

copying build/lib.linux-x86_64-cpython-312/obitools3/apps/arguments.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps

copying build/lib.linux-x86_64-cpython-312/obitools3/apps/command.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps

copying build/lib.linux-x86_64-cpython-312/obitools3/apps/config.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps

copying build/lib.linux-x86_64-cpython-312/obitools3/apps/logging.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps

copying build/lib.linux-x86_64-cpython-312/obitools3/apps/progress.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps

copying build/lib.linux-x86_64-cpython-312/obitools3/apps/temp.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/apps

creating build/bdist.linux-x86_64/wheel/obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/align.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/annotate.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/cat.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/clean.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/count.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/export.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/grep.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/head.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/history.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/import.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/less.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/ls.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/rm.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/sort.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/stats.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/tail.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/test.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

copying build/lib.linux-x86_64-cpython-312/obitools3/commands/uniq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/commands

creating build/bdist.linux-x86_64/wheel/obitools3/dms

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms

creating build/bdist.linux-x86_64/wheel/obitools3/dms/capi

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/capi/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/capi

creating build/bdist.linux-x86_64/wheel/obitools3/dms/column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column

creating build/bdist.linux-x86_64/wheel/obitools3/dms/column/typed_column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column/typed_column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/column.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/column

creating build/bdist.linux-x86_64/wheel/obitools3/dms/taxo

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/taxo/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/taxo

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/taxo

creating build/bdist.linux-x86_64/wheel/obitools3/dms/view

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/view/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/view

creating build/bdist.linux-x86_64/wheel/obitools3/dms/view/typed_view

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/view/typed_view/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/dms/view/typed_view

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/view/typed_view

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/view/view.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms/view

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/dms.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms

copying build/lib.linux-x86_64-cpython-312/obitools3/dms/object.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/dms

creating build/bdist.linux-x86_64/wheel/obitools3/files

copying build/lib.linux-x86_64-cpython-312/obitools3/files/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/files

copying build/lib.linux-x86_64-cpython-312/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/files

copying build/lib.linux-x86_64-cpython-312/obitools3/files/uncompress.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/files

copying build/lib.linux-x86_64-cpython-312/obitools3/files/universalopener.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/files

creating build/bdist.linux-x86_64/wheel/obitools3/format

copying build/lib.linux-x86_64-cpython-312/obitools3/format/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/format

copying build/lib.linux-x86_64-cpython-312/obitools3/format/fasta.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/format

copying build/lib.linux-x86_64-cpython-312/obitools3/format/fastq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/format

copying build/lib.linux-x86_64-cpython-312/obitools3/format/header.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/format

copying build/lib.linux-x86_64-cpython-312/obitools3/format/tab.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/format

creating build/bdist.linux-x86_64/wheel/obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/solexapairend.py -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

copying build/lib.linux-x86_64-cpython-312/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/libalign

creating build/bdist.linux-x86_64/wheel/obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/embl.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/header.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/tab.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

copying build/lib.linux-x86_64-cpython-312/obitools3/parsers/universal.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/parsers

creating build/bdist.linux-x86_64/wheel/obitools3/uri

copying build/lib.linux-x86_64-cpython-312/obitools3/uri/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/uri

copying build/lib.linux-x86_64-cpython-312/obitools3/uri/decode.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/uri

creating build/bdist.linux-x86_64/wheel/obitools3/writers

copying build/lib.linux-x86_64-cpython-312/obitools3/writers/__init__.py -> build/bdist.linux-x86_64/wheel/./obitools3/writers

copying build/lib.linux-x86_64-cpython-312/obitools3/writers/fasta.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/writers

copying build/lib.linux-x86_64-cpython-312/obitools3/writers/fastq.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/writers

copying build/lib.linux-x86_64-cpython-312/obitools3/writers/tab.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3/writers

copying build/lib.linux-x86_64-cpython-312/obitools3/utils.cpython-312-x86_64-linux-gnufilc0.so -> build/bdist.linux-x86_64/wheel/./obitools3

running install_egg_info

running egg_info

creating python/OBITools3.egg-info

writing python/OBITools3.egg-info/PKG-INFO

writing dependency_links to python/OBITools3.egg-info/dependency_links.txt

writing top-level names to python/OBITools3.egg-info/top_level.txt

writing manifest file 'python/OBITools3.egg-info/SOURCES.txt'

reading manifest file 'python/OBITools3.egg-info/SOURCES.txt'

reading manifest template 'MANIFEST.in'

warning: no files found matching '*.c' under directory 'python'

warning: no files found matching '*.h' under directory 'python'

warning: no files found matching '*.txt' under directory 'doc/sphinx/source'

warning: no files found matching '*.rst' under directory 'doc/sphinx/source'

warning: no files found matching '*.py' under directory 'doc/sphinx/source'

warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext'

warning: no files found matching 'doc/sphinx/Makefile'

warning: no files found matching 'doc/sphinx/Doxyfile'

adding license file 'LICENSE'

writing manifest file 'python/OBITools3.egg-info/SOURCES.txt'

Copying python/OBITools3.egg-info to build/bdist.linux-x86_64/wheel/./OBITools3-3.0.1b11-py3.12.egg-info

running install_scripts

creating build/bdist.linux-x86_64/wheel/obitools3-3.0.1b11.data/scripts

copying build/scripts-3.12/obi -> build/bdist.linux-x86_64/wheel/obitools3-3.0.1b11.data/scripts

changing mode of build/bdist.linux-x86_64/wheel/obitools3-3.0.1b11.data/scripts/obi to 755

creating build/bdist.linux-x86_64/wheel/obitools3-3.0.1b11.dist-info/WHEEL

creating 'dist/obitools3-3.0.1b11-cp312-cp312-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it

adding 'obitools3/__init__.py'

adding 'obitools3/utils.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/version.py'

adding 'obitools3/apps/__init__.py'

adding 'obitools3/apps/arguments.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/apps/command.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/apps/config.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/apps/logging.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/apps/progress.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/apps/temp.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/apps/optiongroups/__init__.py'

adding 'obitools3/commands/__init__.py'

adding 'obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/align.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/annotate.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/cat.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/clean.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/count.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/ecotag.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/export.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/grep.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/head.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/history.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/import.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/less.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/ls.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/rm.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/sort.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/stats.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/tail.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/test.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/commands/uniq.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/__init__.py'

adding 'obitools3/dms/dms.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/obiseq.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/object.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/capi/__init__.py'

adding 'obitools3/dms/column/__init__.py'

adding 'obitools3/dms/column/column.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/column/typed_column/__init__.py'

adding 'obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/taxo/__init__.py'

adding 'obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/view/__init__.py'

adding 'obitools3/dms/view/view.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/dms/view/typed_view/__init__.py'

adding 'obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/files/__init__.py'

adding 'obitools3/files/linebuffer.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/files/uncompress.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/files/universalopener.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/format/__init__.py'

adding 'obitools3/format/fasta.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/format/fastq.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/format/header.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/format/tab.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/__init__.py'

adding 'obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/_nws.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/libalign/solexapairend.py'

adding 'obitools3/parsers/__init__.py'

adding 'obitools3/parsers/embl.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/parsers/fasta.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/parsers/fastq.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/parsers/genbank.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/parsers/header.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/parsers/tab.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/parsers/universal.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/uri/__init__.py'

adding 'obitools3/uri/decode.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/writers/__init__.py'

adding 'obitools3/writers/fasta.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/writers/fastq.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3/writers/tab.cpython-312-x86_64-linux-gnufilc0.so'

adding 'obitools3-3.0.1b11.data/scripts/obi'

adding 'obitools3-3.0.1b11.dist-info/licenses/LICENSE'

adding 'obitools3-3.0.1b11.dist-info/METADATA'

adding 'obitools3-3.0.1b11.dist-info/WHEEL'

adding 'obitools3-3.0.1b11.dist-info/top_level.txt'

adding 'obitools3-3.0.1b11.dist-info/RECORD'

removing build/bdist.linux-x86_64/wheel

Finished executing setuptoolsBuildPhase

buildPhase completed in 13 minutes 33 seconds

→ installPhase

Executing pypaInstallPhase

Successfully installed obitools3-3.0.1b11-cp312-cp312-linux_x86_64.whl

Finished executing pypaInstallPhase

→ pythonOutputDistPhase

Executing pythonOutputDistPhase

Finished executing pythonOutputDistPhase

→ fixupPhase

shrinking RPATHs of ELF executables and libraries in /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/libcobitools3.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/utils.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/arguments.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/command.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/config.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/logging.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/progress.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/apps/temp.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/addtaxids.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/align.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/alignpairedend.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/annotate.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/build_ref_db.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/cat.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/clean.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/clean_dms.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/count.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/ecopcr.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/ecotag.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/export.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/grep.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/head.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/history.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/import.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/less.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/ls.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/rm.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/sort.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/stats.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/tail.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/test.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/commands/uniq.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/dms.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/obiseq.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/object.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/column.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/column_idx.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/bool.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/char.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/float.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/int.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/qual.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/seq.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/column/typed_column/str.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/taxo/taxo.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/view/view.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/files/linebuffer.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/files/uncompress.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/files/universalopener.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/format/fasta.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/format/fastq.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/format/header.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/format/tab.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_assemble.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_dynamic.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_freeendgap.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_freeendgapfm.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_nws.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_qsassemble.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_qsrassemble.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_rassemble.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/_solexapairend.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/apat_pattern.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/libalign/shifted_ali.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/embl.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/embl_genbank_features.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/fasta.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/fastq.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/genbank.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/header.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/ngsfilter.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/tab.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/parsers/universal.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/uri/decode.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/writers/fasta.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/writers/fastq.cpython-312-x86_64-linux-gnufilc0.so

shrinking /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib/python3.12/site-packages/obitools3/writers/tab.cpython-312-x86_64-linux-gnufilc0.so

checking for references to /build/ in /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0...

patching script interpreter paths in /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0

stripping (with command strip and flags -S -p) in  /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/lib /nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/bin

shrinking RPATHs of ELF executables and libraries in /nix/store/ysipnl9gz1qib9i2ki93z8192w7rvg23-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0-dist

checking for references to /build/ in /nix/store/ysipnl9gz1qib9i2ki93z8192w7rvg23-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0-dist...

patching script interpreter paths in /nix/store/ysipnl9gz1qib9i2ki93z8192w7rvg23-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0-dist

Rewriting #!/nix/store/nn9ckj7v5gxzzajwz79lzr9kclpvf9pf-python3-3.12.11/bin/python3.12 to #!/nix/store/wk2cw6sgg9rdjpzwxvf0iq8aipy5yvhc-python3-3.12.5-x86_64-unknown-linux-gnufilc0

wrapping `/nix/store/yca8mxhazlp483c2znninpsk68340hpw-obitools3-3.0.1b11-x86_64-unknown-linux-gnufilc0/bin/obi'...

Executing pythonRemoveTestsDir

Finished executing pythonRemoveTestsDir

→ installCheckPhase

no Makefile or custom installCheckPhase, doing nothing

→ pythonRemoveBinBytecodePhase

error: Cannot build '/nix/store/cm9pcfzh415vl7wvbfpc2bkd69smybia-ntbtls-x86_64-unknown-linux-gnufilc0-0.3.2.drv'.
       Reason: builder failed with exit code 1.
       Output paths:
         /nix/store/1f2z9y3rk2p3d8v4bn3dwd4b9hz452px-ntbtls-x86_64-unknown-linux-gnufilc0-0.3.2
         /nix/store/71j3f3www3rb8kfgbpb1s6cg1gzyqi55-ntbtls-x86_64-unknown-linux-gnufilc0-0.3.2-dev
       Last 25 log lines:
       > ***
       > *** You need libgpg-error to build this program.
       > **  This library is for example available at
       > ***   ftp://ftp.gnupg.org/gcrypt/libgpg-error
       > *** (at least version 1.25 is required.)
       > ***
       > configure:
       > ***
       > *** You need libgcrypt to build this program.
       > **  This library is for example available at
       > ***   ftp://ftp.gnupg.org/gcrypt/libgcrypt/
       > *** (at least version 1.8.0 (API 1) is required.)
       > ***
       > configure:
       > ***
       > *** You need libksba to build this program.
       > *** This library is for example available at
       > ***   ftp://ftp.gnupg.org/gcrypt/libksba/
       > *** (at least version 1.2.0 using API 1 is required).
       > ***
       > configure: error:
       > ***
       > *** Required libraries not found. Please consult the above messages
       > *** and install them before running configure again.
       > ***
       For full logs, run:
         nix log /nix/store/cm9pcfzh415vl7wvbfpc2bkd69smybia-ntbtls-x86_64-unknown-linux-gnufilc0-0.3.2.drv

error: Cannot build '/nix/store/93w3f0k5qdxg4ijii2g933jyiykxck2w-ntk-x86_64-unknown-linux-gnufilc0-1.3.1001.drv'.
       Reason: builder failed with exit code 1.
       Output paths:
         /nix/store/vrdv52l7mhxkgjyl1w3qav375l50xqij-ntk-x86_64-unknown-linux-gnufilc0-1.3.1001
       Last 25 log lines:
       > ../FL/Fl_Paged_Device.H:124:15: note: hidden overloaded virtual function 'Fl_Paged_Device::start_job' declared here: different number of parameters (3 vs 4)
       >   124 |   virtual int start_job(int pagecount, int *frompage = NULL, int *topage = NULL);
       >       |               ^
       > 2 warnings generated.
       > 
       > [126/368] Compiling src/fl_encoding_latin1.cxx
       > [127/368] Compiling src/fl_draw_image.cxx
       > [128/368] Compiling src/Fl_Cairo.cxx
       > [129/368] Compiling src/fl_draw.cxx
       > [130/368] Compiling src/fl_dnd.cxx
       > [131/368] Compiling src/Fl_Tree_Item_Array.cxx
       > ../src/fl_draw.cxx:59:3: error: ISO C++17 does not allow 'register' storage class specifier [-Wregister]
       >    59 |   register const unsigned char* p=(const unsigned char*)s;
       >       |   ^~~~~~~~
       > 1 error generated.
       > 
       > In file included from ../src/fl_font.cxx:62:
       > ../src/fl_font_xft.cxx:704:7: warning: variable 'in' set but not used [-Wunused-but-set-variable]
       >   704 |   int in, out, sz;
       >       |       ^
       > 1 warning generated.
       > 
       > Waf: Leaving directory `/build/source/build'
       > Build failed
       >  -> task in 'ntk_shared' failed with exit status 1 (run with -v to display more information)
       For full logs, run:
         nix log /nix/store/93w3f0k5qdxg4ijii2g933jyiykxck2w-ntk-x86_64-unknown-linux-gnufilc0-1.3.1001.drv

error: Cannot build '/nix/store/0kpb24grdcsvn6bi8c6z4d9m0960x812-nullidentdmod-x86_64-unknown-linux-gnufilc0-1.3.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/9yg6l1r0f7bziz18rhl2lpylpkjfkzsl-nullidentdmod-x86_64-unknown-linux-gnufilc0-1.3
       Last 13 log lines:
       > Running phase: unpackPhase
       > unpacking source archive /nix/store/rmpm0s9k604x2qddkjh3qlafbpvs88qd-source
       > source root is source
       > Running phase: patchPhase
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Running phase: configurePhase
       > no configure script, doing nothing
       > Running phase: buildPhase
       > build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
       > gcc -D_POSIX_SOURCE -std=c99 -Wall -Os   -c -o nullidentdmod.o nullidentdmod.c
       > /nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: gcc: command not found
       > make: *** [<builtin>: nullidentdmod.o] Error 127
       For full logs, run:
         nix log /nix/store/0kpb24grdcsvn6bi8c6z4d9m0960x812-nullidentdmod-x86_64-unknown-linux-gnufilc0-1.3.drv

error: Cannot build '/nix/store/51xwx3s9akdv8b7n4hbaws7m820cvl85-numatop-x86_64-unknown-linux-gnufilc0-2.2.drv'.
       Reason: builder failed with exit code 1.
       Output paths:
         /nix/store/z1cppd9cni5n1z2wnfik3bp3l183pj7l-numatop-x86_64-unknown-linux-gnufilc0-2.2
       Last 25 log lines:
       > checking how to hardcode library paths into programs... immediate
       > checking whether stripping libraries is possible... yes
       > checking if libtool supports shared libraries... yes
       > checking whether to build shared libraries... yes
       > checking whether to build static libraries... no
       > checking for x86_64-unknown-linux-gnufilc0-gcc... (cached) clang
       > checking whether the compiler supports GNU C... (cached) yes
       > checking whether clang accepts -g... (cached) yes
       > checking for clang option to enable C11 features... (cached) none needed
       > checking whether clang understands -c and -o together... (cached) yes
       > checking dependency style of clang... (cached) none
       > checking for numa_free in -lnuma... yes
       > checking for pthread_create in -lpthread... yes
       > checking pkg-config is at least version 0.9.0... yes
       > checking for check... no
       > configure: error: Package requirements (check) were not met:
       >
       > No package 'check' found
       >
       > Consider adjusting the PKG_CONFIG_PATH environment variable if you
       > installed software in a non-standard prefix.
       >
       > Alternatively, you may set the environment variables CHECK_CFLAGS
       > and CHECK_LIBS to avoid the need to call pkg-config.
       > See the pkg-config man page for more details.
       For full logs, run:
         nix log /nix/store/51xwx3s9akdv8b7n4hbaws7m820cvl85-numatop-x86_64-unknown-linux-gnufilc0-2.2.drv

error: Cannot build '/nix/store/i1f51id0ch3m9fr53jg4ffbghjskm6wj-nunicode-x86_64-unknown-linux-gnufilc0-1.11.drv'.
       Reason: builder failed with exit code 1.
       Output paths:
         /nix/store/kqcfmd7cvjcqi4n5ab2jmhz6hmcq78sj-nunicode-x86_64-unknown-linux-gnufilc0-1.11-sqlite
         /nix/store/w807igrh78jafkjifrimmnm2xw1kjgz6-nunicode-x86_64-unknown-linux-gnufilc0-1.11
       Last 25 log lines:
       > [ 14%] Building C object libnu/CMakeFiles/nu.dir/cesu8.c.o
       > [ 14%] Building C object libnu/CMakeFiles/nu.dir/ducet.c.o
       > [ 14%] Building C object libnu/CMakeFiles/nu.dir/extra.c.o
       > [ 19%] Building C object libnu/CMakeFiles/nu.dir/strings.c.o
       > [ 28%] Building C object libnu/CMakeFiles/nu.dir/tofold.c.o
       > [ 28%] Building C object libnu/CMakeFiles/nu.dir/strcoll.c.o
       > [ 33%] Building C object libnu/CMakeFiles/nu.dir/tolower.c.o
       > [ 38%] Building C object libnu/CMakeFiles/nu.dir/tounaccent.c.o
       > [ 42%] Building C object libnu/CMakeFiles/nu.dir/toupper.c.o
       > [ 47%] Building C object libnu/CMakeFiles/nu.dir/utf16.c.o
       > [ 57%] Building C object libnu/CMakeFiles/nu.dir/utf16be.c.o
       > [ 57%] Building C object libnu/CMakeFiles/nu.dir/utf16he.c.o
       > [ 61%] Building C object libnu/CMakeFiles/nu.dir/utf16le.c.o
       > [ 66%] Building C object libnu/CMakeFiles/nu.dir/utf32.c.o
       > [ 80%] Building C object libnu/CMakeFiles/nu.dir/utf32be.c.o
       > [ 80%] Building C object libnu/CMakeFiles/nu.dir/utf32he.c.o
       > [ 80%] Building C object libnu/CMakeFiles/nu.dir/utf32le.c.o
       > [ 85%] Building C object libnu/CMakeFiles/nu.dir/utf8.c.o
       > [ 95%] Building C object libnu/CMakeFiles/nu.dir/validate.c.o
       > [ 95%] Building C object libnu/CMakeFiles/nu.dir/version.c.o
       > [100%] Linking C static library libnu.a
       > [100%] Built target nu
       > Running phase: checkPhase
       > running SQLite testsuite
       > /nix/store/ls4rca5iy2gi4227mkdh0ihjxzcw797l-stdenv-linux/setup: line 1768: cd: sqlite3: No such file or directory
       For full logs, run:
         nix log /nix/store/i1f51id0ch3m9fr53jg4ffbghjskm6wj-nunicode-x86_64-unknown-linux-gnufilc0-1.11.drv

error: Cannot build '/nix/store/v6b4dpkxdy92b3442ib1s4kb42cq1l9l-nvi-x86_64-unknown-linux-gnufilc0-1.81.6.drv'.
       Reason: builder failed with exit code 1.
       Output paths:
         /nix/store/gba31w61msphilfkjdi7j85s1dddbb6k-nvi-x86_64-unknown-linux-gnufilc0-1.81.6
       Last 25 log lines:
       > checking for unistd.h... (cached) yes
       > checking for getpagesize... yes
       > checking for working mmap... no
       > checking vfork.h usability... no
       > checking vfork.h presence... no
       > checking for vfork.h... no
       > checking for fork... yes
       > checking for vfork... no
       > checking for working fork... cross
       > configure: WARNING: result yes guessed because of cross compilation
       > checking for fcntl/flock... fcntl
       > checking for ftruncate/chsize... ftruncate
       > checking for tigetstr/tigetnum... yes
       > checking for waddnstr... yes
       > checking for beep... yes
       > checking for flash... yes
       > checking for idlok... yes
       > checking for keypad... yes
       > checking for newterm... yes
       > checking for setupterm... no
       > checking for broken gettimeofday system call... okay
       > checking for System V pty calls... no
       > checking for revoke system call... no
       > checking for int type sprintf return value... configure: error: cannot run test program while cross compiling
       > See `config.log' for more details.
       For full logs, run:
         nix log /nix/store/v6b4dpkxdy92b3442ib1s4kb42cq1l9l-nvi-x86_64-unknown-linux-gnufilc0-1.81.6.drv

error: Cannot build '/nix/store/81gg8p6j6g5vghlhcllmz1m89jgylx11-nvidia-texture-tools-x86_64-unknown-linux-gnufilc0-2.1.2-unstable-2020-12-21.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/1qfkmbdaxqb8x6rasmi8bdfwa2rhj4ak-nvidia-texture-tools-x86_64-unknown-linux-gnufilc0-2.1.2-unstable-2020-12-21
         /nix/store/i1y3dr1pga9jsibgnx0p59kvyd9xs3l3-nvidia-texture-tools-x86_64-unknown-linux-gnufilc0-2.1.2-unstable-2020-12-21-lib
         /nix/store/l96q4rciq7vhxm619dv007nvspiwf3rj-nvidia-texture-tools-x86_64-unknown-linux-gnufilc0-2.1.2-unstable-2020-12-21-dev
       Last 25 log lines:
       > clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
       > make[2]: *** [src/nvtt/tools/CMakeFiles/nvzoom.dir/build.make:114: src/nvtt/tools/nvzoom] Error 1
       > make[1]: *** [CMakeFiles/Makefile2:1142: src/nvtt/tools/CMakeFiles/nvzoom.dir/all] Error 2
       > [ 90%] Linking CXX executable nvcompress
       > warning: Skipping impure flag -march=native because NIX_ENFORCE_NO_NATIVE is set
       > ../libnvtt.so: error: undefined reference to 'pizlonated_log2f'
       > ../libnvtt.so: error: undefined reference to 'pizlonated_exp2f'
       > ../libnvtt.so: error: undefined reference to 'pizlonated_atan2f'
       > ../libnvtt.so: error: undefined reference to 'pizlonated_cosf'
       > ../libnvtt.so: error: undefined reference to 'pizlonated_acosf'
       > ../libnvtt.so: error: undefined reference to 'pizlonated_atanf'
       > ../libnvtt.so: error: undefined reference to 'pizlonated_sqrt'
       > ../libnvtt.so: error: undefined reference to 'pizlonated_acos'
       > ../../nvcore/libnvcore.a(StrLib.cpp.o):StrLib.cpp:function pizlonatedFI269_logf:(.text+0xc531): error: undefined reference to 'pizlonated_logf'
       > ../../nvimage/libnvimage.a(DirectDrawSurface.cpp.o):DirectDrawSurface.cpp:function pizlonatedFI269_sqrtf:(.text+0x136e1): error: undefined reference to 'pizlonated_sqrtf'
       > ../../nvimage/libnvimage.a(FloatImage.cpp.o):FloatImage.cpp:function pizlonatedFI3195_powf:(.text+0x1e6a7): error: undefined reference to 'pizlonated_powf'
       > ../../nvimage/libnvimage.a(FloatImage.cpp.o):FloatImage.cpp:function pizlonatedFI269_sqrtf:(.text+0x1e891): error: undefined reference to 'pizlonated_sqrtf'
       > ../../nvimage/libnvimage.a(ImageIO.cpp.o):ImageIO.cpp:function pizlonatedFI3195_powf:(.text+0x9c727): error: undefined reference to 'pizlonated_powf'
       > ../../nvimage/libnvimage.a(Filter.cpp.o):Filter.cpp:function pizlonatedFI269_sinf:(.text+0x9ea1): error: undefined reference to 'pizlonated_sinf'
       > ../../nvimage/libnvimage.a(Filter.cpp.o):Filter.cpp:function pizlonatedFI269_sqrtf:(.text+0x9f81): error: undefined reference to 'pizlonated_sqrtf'
       > ../../nvimage/libnvimage.a(Filter.cpp.o):Filter.cpp:function pizlonatedFI269_expf:(.text+0xa061): error: undefined reference to 'pizlonated_expf'
       > clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
       > make[2]: *** [src/nvtt/tools/CMakeFiles/nvcompress.dir/build.make:114: src/nvtt/tools/nvcompress] Error 1
       > make[1]: *** [CMakeFiles/Makefile2:937: src/nvtt/tools/CMakeFiles/nvcompress.dir/all] Error 2
       > make: *** [Makefile:166: all] Error 2
       For full logs, run:
         nix log /nix/store/81gg8p6j6g5vghlhcllmz1m89jgylx11-nvidia-texture-tools-x86_64-unknown-linux-gnufilc0-2.1.2-unstable-2020-12-21.drv

error: Cannot build '/nix/store/p0pz64x0saxnynfn02729w6zmarlz7ly-nx-libs-x86_64-unknown-linux-gnufilc0-3.5.99.26.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/gv4f73m4045y8al2dzn8fqvvfmlv24fl-nx-libs-x86_64-unknown-linux-gnufilc0-3.5.99.26
       Last 25 log lines:
       > make[4]: Leaving directory '/build/source/nx-X11/programs'
       > make[3]: Leaving directory '/build/source/nx-X11'
       > make -f xmakefile -j1 includes
       > make[3]: Entering directory '/build/source/nx-X11'
       > + mkdir -p ./exports/include
       > + mkdir -p ./exports/bin
       > including in ./include...
       > make[4]: Entering directory '/build/source/nx-X11/include'
       > make[4]: *** No rule to make target 'includes'.  Stop.
       > make[4]: Leaving directory '/build/source/nx-X11/include'
       > including in ./config...
       > make[4]: Entering directory '/build/source/nx-X11/config'
       > make[4]: *** No rule to make target 'includes'.  Stop.
       > make[4]: Leaving directory '/build/source/nx-X11/config'
       > including in ./programs...
       > make[4]: Entering directory '/build/source/nx-X11/programs'
       > make[4]: *** No rule to make target 'includes'.  Stop.
       > make[4]: Leaving directory '/build/source/nx-X11/programs'
       > make[3]: *** [xmakefile:604: includes] Error 2
       > make[3]: Leaving directory '/build/source/nx-X11'
       > make[2]: *** [Makefile:102: includes] Error 2
       > make[2]: Leaving directory '/build/source/nx-X11'
       > make[1]: *** [Makefile:132: build-env] Error 2
       > make[1]: Leaving directory '/build/source'
       > make: *** [Makefile:191: build] Error 2
       For full logs, run:
         nix log /nix/store/p0pz64x0saxnynfn02729w6zmarlz7ly-nx-libs-x86_64-unknown-linux-gnufilc0-3.5.99.26.drv

error: Cannot build '/nix/store/30k4bbqfhgxb2wg98ahfcs8c62xf8q8v-nyx-2.1.0-x86_64-unknown-linux-gnufilc0.drv'.
       Reason: 1 dependency failed.
       Output paths:
         /nix/store/9jgp5wm1xgbqjifal5ay26glk8wk8vk2-nyx-2.1.0-x86_64-unknown-linux-gnufilc0-dist
         /nix/store/b4h6apzl7if6akyyvpi1c45zfayv6gm8-nyx-2.1.0-x86_64-unknown-linux-gnufilc0

error: Cannot build '/nix/store/bdsm5dmzzc6jsbaf5vmf2yy2ji37384f-oatpp-x86_64-unknown-linux-gnufilc0-1.3.1.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/nb1rdmd0cx0kq4s6x3xlwppyvwdnqcfw-oatpp-x86_64-unknown-linux-gnufilc0-1.3.1
       Last 25 log lines:
       > /build/source/src/oatpp/core/base/Environment.hpp:552:80: note: expanded from macro 'OATPP_LOGD'
       >   552 |   oatpp::base::Environment::logFormatted(oatpp::base::Logger::PRIORITY_D, TAG, __VA_ARGS__);
       >       |                                                                                ^~~~~~~~~~~
       > /build/source/test/oatpp/web/PipelineTest.cpp:132:10: note: in instantiation of function template specialization 'oatpp::test::web::ClientServerTestRunner::run<(lambda at /build/source/test/oatpp/web/PipelineTest.cpp:132:14)>' requested here
       >   132 |   runner.run([this] {
       >       |          ^
       > 1 warning generated.
       > In file included from /build/source/test/oatpp/web/FullTest.cpp:52:
       > /build/source/src/oatpp-test/web/ClientServerTestRunner.hpp:140:129: warning: format specifies type 'long' but the argument has type 'rep' (aka 'long long') [-Wformat]
       >   140 |     OATPP_LOGD("\033[1;34mClientServerTestRunner\033[0m", "\033[1;34mFinished with time %ld(micro). Stopping server...\033[0m", elapsed.count())
       >       |                                                                                         ~~~                                     ^~~~~~~~~~~~~~~
       >       |                                                                                         %lld
       > /build/source/src/oatpp/core/base/Environment.hpp:552:80: note: expanded from macro 'OATPP_LOGD'
       >   552 |   oatpp::base::Environment::logFormatted(oatpp::base::Logger::PRIORITY_D, TAG, __VA_ARGS__);
       >       |                                                                                ^~~~~~~~~~~
       > /build/source/test/oatpp/web/FullTest.cpp:152:10: note: in instantiation of function template specialization 'oatpp::test::web::ClientServerTestRunner::run<(lambda at /build/source/test/oatpp/web/FullTest.cpp:152:14)>' requested here
       >   152 |   runner.run([this] {
       >       |          ^
       > 1 warning generated.
       > [100%] Linking CXX executable oatppAllTests
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: cannot find -latomic
       > clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
       > make[2]: *** [test/CMakeFiles/oatppAllTests.dir/build.make:951: test/oatppAllTests] Error 1
       > make[1]: *** [CMakeFiles/Makefile2:197: test/CMakeFiles/oatppAllTests.dir/all] Error 2
       > make: *** [Makefile:166: all] Error 2
       For full logs, run:
         nix log /nix/store/bdsm5dmzzc6jsbaf5vmf2yy2ji37384f-oatpp-x86_64-unknown-linux-gnufilc0-1.3.1.drv

error: build of '/nix/store/0kpb24grdcsvn6bi8c6z4d9m0960x812-nullidentdmod-x86_64-unknown-linux-gnufilc0-1.3.drv^*', '/nix/store/30k4bbqfhgxb2wg98ahfcs8c62xf8q8v-nyx-2.1.0-x86_64-unknown-linux-gnufilc0.drv^*', '/nix/store/51xwx3s9akdv8b7n4hbaws7m820cvl85-numatop-x86_64-unknown-linux-gnufilc0-2.2.drv^*', '/nix/store/81gg8p6j6g5vghlhcllmz1m89jgylx11-nvidia-texture-tools-x86_64-unknown-linux-gnufilc0-2.1.2-unstable-2020-12-21.drv^*', '/nix/store/93w3f0k5qdxg4ijii2g933jyiykxck2w-ntk-x86_64-unknown-linux-gnufilc0-1.3.1001.drv^*', '/nix/store/bdsm5dmzzc6jsbaf5vmf2yy2ji37384f-oatpp-x86_64-unknown-linux-gnufilc0-1.3.1.drv^*', '/nix/store/cm9pcfzh415vl7wvbfpc2bkd69smybia-ntbtls-x86_64-unknown-linux-gnufilc0-0.3.2.drv^*', '/nix/store/i1f51id0ch3m9fr53jg4ffbghjskm6wj-nunicode-x86_64-unknown-linux-gnufilc0-1.11.drv^*', '/nix/store/p0pz64x0saxnynfn02729w6zmarlz7ly-nx-libs-x86_64-unknown-linux-gnufilc0-3.5.99.26.drv^*', '/nix/store/v6b4dpkxdy92b3442ib1s4kb42cq1l9l-nvi-x86_64-unknown-linux-gnufilc0-1.81.6.drv^*' failed