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checking dependency style of g++... checking for clearerr_unlocked... no

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gcc3

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yes

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checking whether mmap with MAP_ANON(YMOUS) works... yes

checking whether to enable maintainer-specific portions of Makefiles... no

checking for ffs... configure: updating cache ./config.cache

configure: creating ./config.status

yes

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yes

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configure: updating cache ./config.cache

configure: creating ./config.status

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yes

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yes

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In file included from /build/source/src/util/algo/greedy_vertex_cover.cpp:22:

/build/source/src/util/algo/algo.h:5:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

    5 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 44%] Building CXX object CMakeFiles/diamond.dir/src/util/system/getRSS.cpp.o

checking whether fileno_unlocked is declared... checking for memset... yes

checking for mkstemps... yes

checking whether fprintf_unlocked is declared... yes

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checking whether fputc_unlocked is declared... yes

[ 45%] Building CXX object CMakeFiles/diamond.dir/src/lib/tantan/LambdaCalculator.cc.o

checking for putenv... yes

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yes

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[ 45%] Building CXX object CMakeFiles/diamond.dir/src/util/string/string.cpp.o

checking for rename... yes

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yes

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checking for alloca... yes

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checking for ANSI C header files... (cached) yes

checking for nl_langinfo and CODESET... yes

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yes

checking whether NLS is requested... no

checking for msgfmt... checking for strcasecmp... /nix/store/ava9h9a35fg419f4r1h3ib2hwqx6lr8k-gettext-0.22.5/bin/msgfmt

checking for gmsgfmt... /nix/store/ava9h9a35fg419f4r1h3ib2hwqx6lr8k-gettext-0.22.5/bin/msgfmt

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checking for msgmerge... /nix/store/ava9h9a35fg419f4r1h3ib2hwqx6lr8k-gettext-0.22.5/bin/msgmerge

yes

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checking size of ino_t... yes

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checking for strstr... yes

checking for strstr... yes

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yes

checking for strtod... configure: updating cache ./config.cache

yes

configure: creating ./config.status

checking for strtol... yes

checking for strtol... yes

checking for strtoul... config.status: creating Makefile

[ 46%] Building CXX object CMakeFiles/diamond.dir/src/align/extend.cpp.o

config.status: creating config.h

config.status: executing depdir commands

mkdir -p -- .deps

config.status: executing default-1 commands

yes

yes

In file included from /build/source/src/search/stage0.cpp:25:

In file included from /build/source/src/search/search.h:24:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

checking for strtoul... checking for strtoll... yes

yes

[ 46%] Building CXX object CMakeFiles/diamond.dir/src/test/test.cpp.o

checking for strtoull... checking for strtoll... yes

yes

checking for strverscmp... checking for strtoull... yes

yes

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yes

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yes

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yes

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yes

checking for vsprintf... checking for vsnprintf... yes

yes

checking for waitpid... checking for vsprintf... yes

checking for setproctitle... yes

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checking whether alloca needs Cray hooks... yes

no

checking stack direction for C alloca... checking for setproctitle... no

checking whether alloca needs Cray hooks... -1

checking for vfork.h... no

checking stack direction for C alloca... no

checking for fork... -1

checking for vfork.h... yes

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checking for working fork... yes

[ 47%] Building CXX object CMakeFiles/diamond.dir/src/align/ungapped.cpp.o

checking for vfork... yes

yes

checking for working vfork... (cached) yes

checking for _doprnt... checking for working fork... no

checking for sys_errlist... yes

checking for working vfork... (cached) yes

checking for _doprnt... no

checking for sys_nerr... no

checking for sys_errlist... no

checking for sys_siglist... no

checking for sys_nerr... no

checking for external symbol _system_configuration... no

checking for sys_siglist... no

checking for __fsetlocking... no

checking for external symbol _system_configuration... yes

checking for canonicalize_file_name... no

checking for __fsetlocking... yes

checking for dup3... yes

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checking for getrlimit... yes

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checking for getrusage... yes

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checking for getsysinfo... yes

checking for getrusage... no

checking for gettimeofday... (cached) yes

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checking for getsysinfo... yes

checking for pipe2... no

checking for gettimeofday... (cached) yes

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checking for posix_spawn... yes

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checking for posix_spawnp... yes

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checking for psignal... yes

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checking for pstat_getdynamic... yes

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checking for pstat_getstatic... yes

checking for pstat_getdynamic... no

checking for realpath... no

checking for pstat_getstatic... yes

checking for setrlimit... no

checking for realpath... yes

checking for spawnve... yes

checking for setrlimit... no

checking for spawnvpe... yes

checking for spawnve... no

checking for strerror... no

checking for spawnvpe... yes

checking for strsignal... no

checking for strerror... yes

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checking for table... no

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yes

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yes

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checking whether getenv is declared... yes

checking whether malloc is declared... yes

checking whether getopt is declared... yes

checking whether realloc is declared... yes

checking whether malloc is declared... yes

checking whether sbrk is declared... yes

checking whether realloc is declared... yes

checking whether strtol is declared... yes

checking whether sbrk is declared... yes

checking whether strtoul is declared... yes

checking whether strtol is declared... yes

checking whether strtoll is declared... yes

checking whether strtoul is declared... yes

checking whether strtoull is declared... yes

checking whether strtoll is declared... yes

checking whether strverscmp is declared... yes

checking whether strtoull is declared... yes

checking whether strnlen is declared... yes

checking whether strverscmp is declared... yes

checking whether canonicalize_file_name must be declared... yes

checking whether strnlen is declared... no

checking for SHA1 HW acceleration support... yes

checking whether canonicalize_file_name must be declared... no

checking for SHA1 HW acceleration support... x86 SHA1

checking for stdlib.h... (cached) yes

checking for unistd.h... (cached) yes

checking for sys/param.h... (cached) yes

checking for getpagesize... (cached) yes

checking for working mmap... x86 SHA1

checking for stdlib.h... (cached) yes

checking for unistd.h... (cached) yes

checking for sys/param.h... (cached) yes

checking for getpagesize... (cached) yes

checking for working mmap... yes

checking for working strncmp... yes

checking for working strncmp... yes

configure: updating cache ./config.cache

configure: creating ./config.status

yes

configure: updating cache ./config.cache

configure: creating ./config.status

config.status: creating Makefile

config.status: creating testsuite/Makefile

config.status: creating config.h

config.status: executing default commands

config.status: creating Makefile

config.status: creating testsuite/Makefile

config.status: creating config.h

config.status: executing default commands

make[1]: Leaving directory '/build/build'

make: *** [Makefile:1046: all] Error 2

error: Cannot build '/nix/store/psra7llal8k04zkfrn2m6c169f6ci0xs-x86_64-unknown-linux-gnufilc0-libgccjit-14.3.0.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/4mv3yydqlg9b7cad7zcq2jnfzkgivc1j-x86_64-unknown-linux-gnufilc0-libgccjit-14.3.0-man
         /nix/store/ccbkxh5hbkj3j43i3pldhfgnm7h80slz-x86_64-unknown-linux-gnufilc0-libgccjit-14.3.0
         /nix/store/w9z78n8yil183vwpyq4djwkq2lg64izw-x86_64-unknown-linux-gnufilc0-libgccjit-14.3.0-info
       Last 25 log lines:
       > checking for sys/param.h... (cached) yes
       > checking for getpagesize... (cached) yes
       > checking for working mmap... x86 SHA1
       > checking for stdlib.h... (cached) yes
       > checking for unistd.h... (cached) yes
       > checking for sys/param.h... (cached) yes
       > checking for getpagesize... (cached) yes
       > checking for working mmap... yes
       > checking for working strncmp... yes
       > checking for working strncmp... yes
       > configure: updating cache ./config.cache
       > configure: creating ./config.status
       > yes
       > configure: updating cache ./config.cache
       > configure: creating ./config.status
       > config.status: creating Makefile
       > config.status: creating testsuite/Makefile
       > config.status: creating config.h
       > config.status: executing default commands
       > config.status: creating Makefile
       > config.status: creating testsuite/Makefile
       > config.status: creating config.h
       > config.status: executing default commands
       > make[1]: Leaving directory '/build/build'
       > make: *** [Makefile:1046: all] Error 2
       For full logs, run:
         nix log /nix/store/psra7llal8k04zkfrn2m6c169f6ci0xs-x86_64-unknown-linux-gnufilc0-libgccjit-14.3.0.drv

error: Cannot build '/nix/store/1vliyiwnnj6h0biv5d307mp5cfmig1z9-native-comp-driver-options-30.patch.drv'.
       Reason: 1 dependency failed.
       Output paths:
         /nix/store/zzvzb89qbhv6vaqpd5dsxypjvb8yx7vr-native-comp-driver-options-30.patch

error: Cannot build '/nix/store/jfl6bmrb22n5w7gfh3iqz8lshsylad6n-emacs-30.2.drv'.
       Reason: 2 dependencies failed.
       Output paths:
         /nix/store/l4m9v25pm6zgzib2kc00fzfll4kx1ap0-emacs-30.2

[ 48%] Building CXX object CMakeFiles/diamond.dir/src/align/gapped_score.cpp.o

In file included from /build/source/src/align/ungapped.cpp:28:

In file included from /build/source/src/align/target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 48%] Building CXX object CMakeFiles/diamond.dir/src/align/gapped_final.cpp.o

In file included from /build/source/src/align/extend.cpp:33:

In file included from /build/source/src/align/target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 49%] Building CXX object CMakeFiles/diamond.dir/src/align/full_db.cpp.o

In file included from /build/source/src/align/gapped_score.cpp:23:

In file included from /build/source/src/align/target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 49%] Building CXX object CMakeFiles/diamond.dir/src/align/culling.cpp.o

In file included from /build/source/src/align/gapped_final.cpp:2:

In file included from /build/source/src/align/target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 50%] Building CXX object CMakeFiles/diamond.dir/src/cluster/cluster_registry.cpp.o

[ 50%] Building CXX object CMakeFiles/diamond.dir/src/cluster/cascaded/cascaded.cpp.o

In file included from /build/source/src/align/full_db.cpp:2:

In file included from /build/source/src/align/target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 51%] Building CXX object CMakeFiles/diamond.dir/src/align/output.cpp.o

In file included from /build/source/src/data/taxon_list.cpp:28:

/build/source/src/util/algo/external_sort.h:27:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   27 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

In file included from /build/source/src/data/taxon_list.cpp:29:

/build/source/src/util/algo/sort_helper.h:39:16: warning: 'result_of<(lambda at /build/source/src/data/taxon_list.cpp:110:21) (const std::pair<std::string, long> &, const std::pair<std::string, int> &)>' is deprecated [-Wdeprecated-declarations]

   39 |         typename std::result_of<Value(const typename It1::Value&, const typename It2::Value&)>::type operator*() const {

      |                       ^

/build/source/src/data/taxon_list.cpp:111:12: note: in instantiation of template class 'SortedListJoiner<ExternalSorter<std::pair<std::string, long>, std::less<std::pair<std::string, long>>>, ExternalSorter<std::pair<std::string, int>>, First<std::string, long>, First<std::string, int>, (lambda at /build/source/src/data/taxon_list.cpp:110:21)>' requested here

  111 |         auto it = join_sorted_lists(acc2oid, acc2taxid, First<string, OId>(), First<string, TaxId>(), value);

      |                   ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<(lambda at /build/source/src/data/taxon_list.cpp:110:21) (const std::pair<std::string, long> &, const std::pair<std::string, int> &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/data/taxon_list.cpp:29:

/build/source/src/util/algo/sort_helper.h:125:82: warning: 'result_of<First<long, int> (const std::pair<long, int> &)>' is deprecated [-Wdeprecated-declarations]

  125 | KeyMerger<It, Key, Value> merge_keys(It& it, Key key, Value value, typename std::result_of<Key(const typename It::Value&)>::type begin) {

      |                                                                                  ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<First<long, int> (const std::pair<long, int> &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/data/taxon_list.cpp:29:

/build/source/src/util/algo/sort_helper.h:91:24: warning: 'result_of<First<long, int> (const std::pair<long, int> &)>' is deprecated [-Wdeprecated-declarations]

   91 |         typedef typename std::result_of<Key(const typename It::Value&)>::type KeyType;

      |                               ^

/build/source/src/data/taxon_list.cpp:123:18: note: in instantiation of template class 'KeyMerger<ExternalSorter<std::pair<long, int>>, First<long, int>, Second<long, int>>' requested here

  123 |         auto taxid_it = merge_keys(oid2taxid, First<OId, TaxId>(), Second<OId, TaxId>(), 0);

      |                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<First<long, int> (const std::pair<long, int> &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/data/taxon_list.cpp:29:

/build/source/src/util/algo/sort_helper.h:92:24: warning: 'result_of<Second<long, int> (const std::pair<long, int> &)>' is deprecated [-Wdeprecated-declarations]

   92 |         typedef typename std::result_of<Value(const typename It::Value&)>::type ValueType;

      |                               ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<Second<long, int> (const std::pair<long, int> &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

5 warnings generated.

[ 51%] Building CXX object CMakeFiles/diamond.dir/src/tools/roc.cpp.o

In file included from /build/source/src/tools/tools.cpp:12:

In file included from /build/source/src/search/search.h:24:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 52%] Building CXX object CMakeFiles/diamond.dir/src/test/data.cpp.o

In file included from /build/source/src/cluster/cluster_registry.cpp:20:

In file included from /build/source/src/cluster/cluster_registry.h:21:

In file included from /build/source/src/cluster/cluster.h:25:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 53%] Building CXX object CMakeFiles/diamond.dir/src/test/test_cases.cpp.o

[ 53%] Building CXX object CMakeFiles/diamond.dir/src/chaining/smith_waterman.cpp.o

[ 54%] Building CXX object CMakeFiles/diamond.dir/src/output/xml_format.cpp.o

In file included from /build/source/src/align/culling.cpp:22:

In file included from /build/source/src/align/target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 54%] Building CXX object CMakeFiles/diamond.dir/src/align/gapped_filter.cpp.o

[ 55%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/filestack.cpp.o

[ 55%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/parallelizer.cpp.o

[ 56%] Building CXX object CMakeFiles/diamond.dir/src/util/parallel/multiprocessing.cpp.o

[ 56%] Building CXX object CMakeFiles/diamond.dir/src/tools/benchmark_io.cpp.o

[ 57%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprob.cpp.o

In file included from /build/source/src/align/gapped_filter.cpp:24:

In file included from /build/source/src/align/target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogproblim.cpp.o

[ 58%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_dynprogprobproto.cpp.o

[ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_ioutil.cpp.o

[ 59%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstat.cpp.o

[ 60%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatmatrix.cpp.o

[ 60%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_localmaxstatutil.cpp.o

[ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/njn_random.cpp.o

In file included from /build/source/src/cluster/cascaded/cascaded.cpp:23:

In file included from /build/source/src/cluster/cascaded/cascaded.h:23:

In file included from /build/source/src/cluster/cascaded/../cluster.h:25:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 61%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alignment_evaluer.cpp.o

[ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp.cpp.o

[ 62%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_data.cpp.o

[ 63%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_regression.cpp.o

[ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_alp_sim.cpp.o

[ 64%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_basic.cpp.o

[ 65%] Building CXX object CMakeFiles/diamond.dir/src/lib/alp/sls_pvalues.cpp.o

[ 65%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/global_ranking.cpp.o

/build/source/src/lib/alp/sls_alp_data.cpp:356:20: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion]

  356 |                 double tmp_size1=LONG_MAX;

      |                        ~~~~~~~~~ ^~~~~~~~

/nix/store/pslnwc5c5msmzmm18l3jc6s0kpf5zyzl-filc0-resource-dir/lib/clang/20/include/limits.h:51:19: note: expanded from macro 'LONG_MAX'

   51 | #define LONG_MAX  __LONG_MAX__

      |                   ^~~~~~~~~~~~

<built-in>:127:22: note: expanded from macro '__LONG_MAX__'

  127 | #define __LONG_MAX__ 9223372036854775807L

      |                      ^~~~~~~~~~~~~~~~~~~~

1 warning generated.

[ 66%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/extend.cpp.o

[ 66%] Building CXX object CMakeFiles/diamond.dir/src/tools/rocid.cpp.o

[ 67%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_seg.cpp.o

[ 67%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_filter.cpp.o

[ 68%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/nlm_linear_algebra.cpp.o

/build/source/src/tools/benchmark_io.cpp:34:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   34 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 69%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/blosum45.cpp.o

[ 69%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/blosum50.cpp.o

[ 70%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/blosum62.cpp.o

In file included from /build/source/src/align/global_ranking/global_ranking.cpp:22:

In file included from /build/source/src/align/global_ranking/global_ranking.h:25:

In file included from /build/source/src/align/global_ranking/../target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 70%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/blosum80.cpp.o

[ 71%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/blosum90.cpp.o

[ 71%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/pam250.cpp.o

[ 72%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/pam30.cpp.o

[ 72%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrices/pam70.cpp.o

[ 73%] Building CXX object CMakeFiles/diamond.dir/src/stats/stats.cpp.o

[ 74%] Building CXX object CMakeFiles/diamond.dir/src/stats/cbs.cpp.o

In file included from /build/source/src/align/global_ranking/extend.cpp:26:

In file included from /build/source/src/align/global_ranking/global_ranking.h:25:

In file included from /build/source/src/align/global_ranking/../target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 74%] Building CXX object CMakeFiles/diamond.dir/src/stats/comp_based_stats.cpp.o

[ 75%] Building CXX object CMakeFiles/diamond.dir/src/stats/hauser_correction.cpp.o

[ 75%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrix_adjust.cpp.o

[ 76%] Building CXX object CMakeFiles/diamond.dir/src/stats/matrix_adjust_eigen.cpp.o

[ 76%] Building CXX object CMakeFiles/diamond.dir/src/data/index.cpp.o

[ 77%] Building CXX object CMakeFiles/diamond.dir/src/data/dmnd/dmnd.cpp.o

[ 77%] Building CXX object CMakeFiles/diamond.dir/src/data/sequence_file.cpp.o

[ 78%] Building CXX object CMakeFiles/diamond.dir/src/tools/find_shapes.cpp.o

[ 79%] Building CXX object CMakeFiles/diamond.dir/src/data/block/block.cpp.o

In file included from /build/source/src/data/index.cpp:3:

In file included from /build/source/src/search/search.h:24:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 79%] Building CXX object CMakeFiles/diamond.dir/src/data/block/block_wrapper.cpp.o

[ 80%] Building CXX object CMakeFiles/diamond.dir/src/run/config.cpp.o

[ 80%] Building CXX object CMakeFiles/diamond.dir/src/data/sequence_set.cpp.o

In file included from /build/source/src/stats/matrix_adjust_eigen.cpp:21:

In file included from /build/source/src/lib/Eigen/Dense:1:

In file included from /build/source/src/lib/Eigen/Core:367:

/build/source/src/lib/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_product_op<float> (const float &, const float &)>' is deprecated [-Wdeprecated-declarations]

  320 |   typedef typename std::result_of<T>::type type1;

      |                         ^

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_product_op<float> (const float &, const float &)>' requested here

   33 |   typedef typename result_of<

      |                    ^

/build/source/src/lib/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float>, const Eigen::PartialReduxExpr<const Eigen::Matrix<float, 20, 20, 1>, Eigen::internal::member_sum<float>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, 20, 1, 1, 20>>>>' requested here

  497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>

      |                                                        ^

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_product_op<float, float>, const PartialReduxExpr<const Matrix<float, 20, 20, 1, 20, 20>, member_sum<float>, 0>, const CwiseNullaryOp<scalar_constant_op<float>, const Matrix<float, 1, 20, 1, 1, 20>>>>' required here

  149 |   : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type

      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<float>, const Eigen::PartialReduxExpr<const Eigen::Matrix<float, 20, 20, 1>, Eigen::internal::member_sum<float>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, 20, 1, 1, 20>>, Eigen::Dense>' requested here

   78 |   public CwiseBinaryOpImpl<

      |          ^

/build/source/src/stats/matrix_adjust_eigen.cpp:105:36: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float>, const Eigen::PartialReduxExpr<const Eigen::Matrix<float, 20, 20, 1>, Eigen::internal::member_sum<float>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, 20, 1, 1, 20>>>' requested here

  105 |     VectorN sc = x.colwise().sum() * alpha, sr = x.rowwise().sum() * alpha;

      |                                    ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<Eigen::internal::scalar_product_op<float> (const float &, const float &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/stats/matrix_adjust_eigen.cpp:21:

In file included from /build/source/src/lib/Eigen/Dense:1:

In file included from /build/source/src/lib/Eigen/Core:367:

/build/source/src/lib/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_opposite_op<float> (const float &)>' is deprecated [-Wdeprecated-declarations]

  320 |   typedef typename std::result_of<T>::type type1;

      |                         ^

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_opposite_op<float> (const float &)>' requested here

   21 |   typedef typename result_of<

      |                    ^

/build/source/src/lib/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<float>, const Eigen::Block<const Eigen::Matrix<float, 2, 400, 1>, 1, 400, true>>>' requested here

  497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>

      |                                                        ^

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_opposite_op<float>, const Block<const Matrix<float, 2, 400, 1, 2, 400>, 1, 400, true>>>' required here

   95 |   : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type

      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<float>, const Eigen::Block<const Eigen::Matrix<float, 2, 400, 1>, 1, 400, true>, Eigen::Dense>' requested here

   55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator

      |                             ^

/build/source/src/stats/matrix_adjust_eigen.cpp:155:18: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<float>, const Eigen::Block<const Eigen::Matrix<float, 2, 400, 1>, 1, 400, true>>' requested here

  155 |     VectorNN v = -grads.row(0) + eta * grads.row(1);

      |                  ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<Eigen::internal::scalar_opposite_op<float> (const float &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/stats/matrix_adjust_eigen.cpp:21:

In file included from /build/source/src/lib/Eigen/Dense:1:

In file included from /build/source/src/lib/Eigen/Core:367:

/build/source/src/lib/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_sum_op<float> (const float &, const float &)>' is deprecated [-Wdeprecated-declarations]

  320 |   typedef typename std::result_of<T>::type type1;

      |                         ^

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_sum_op<float> (const float &, const float &)>' requested here

   33 |   typedef typename result_of<

      |                    ^

/build/source/src/lib/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<float>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<float>, const Eigen::Block<const Eigen::Matrix<float, 2, 400, 1>, 1, 400, true>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, 400>>, const Eigen::Block<const Eigen::Matrix<float, 2, 400, 1>, 1, 400, true>>>>' requested here

  497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>

      |                                                        ^

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_sum_op<float, float>, const CwiseUnaryOp<scalar_opposite_op<float>, const Block<const Matrix<float, 2, 400, 1, 2, 400>, 1, 400, true>>, const CwiseBinaryOp<scalar_product_op<float, float>, const CwiseNullaryOp<scalar_constant_op<float>, const Matrix<float, 1, 400, 1, 1, 400>>, const Block<const Matrix<float, 2, 400, 1, 2, 400>, 1, 400, true>>>>' required here

  149 |   : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type

      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<float>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<float>, const Eigen::Block<const Eigen::Matrix<float, 2, 400, 1>, 1, 400, true>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, 400>>, const Eigen::Block<const Eigen::Matrix<float, 2, 400, 1>, 1, 400, true>>, Eigen::Dense>' requested here

   78 |   public CwiseBinaryOpImpl<

      |          ^

/build/source/src/stats/matrix_adjust_eigen.cpp:155:32: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<float>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<float>, const Eigen::Block<const Eigen::Matrix<float, 2, 400, 1>, 1, 400, true>>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, 400>>, const Eigen::Block<const Eigen::Matrix<float, 2, 400, 1>, 1, 400, true>>>' requested here

  155 |     VectorNN v = -grads.row(0) + eta * grads.row(1);

      |                                ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<Eigen::internal::scalar_sum_op<float> (const float &, const float &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/stats/matrix_adjust_eigen.cpp:21:

In file included from /build/source/src/lib/Eigen/Dense:1:

In file included from /build/source/src/lib/Eigen/Core:367:

/build/source/src/lib/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_quotient_op<float> (const float &, const float &)>' is deprecated [-Wdeprecated-declarations]

  320 |   typedef typename std::result_of<T>::type type1;

      |                         ^

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_quotient_op<float> (const float &, const float &)>' requested here

   33 |   typedef typename result_of<

      |                    ^

/build/source/src/lib/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>>>' requested here

  497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>

      |                                                        ^

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_quotient_op<float, float>, const ArrayWrapper<const Matrix<float, 20, 20, 1, 20, 20>>, const ArrayWrapper<const Matrix<float, 20, 20, 1, 20, 20>>>>' required here

  149 |   : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type

      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<float>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>, Eigen::Dense>' requested here

   78 |   public CwiseBinaryOpImpl<

      |          ^

/build/source/src/stats/matrix_adjust_eigen.cpp:305:30: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>>' requested here

  305 |     MatrixN tmp = (x.array() / q.array()).log();

      |                              ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<Eigen::internal::scalar_quotient_op<float> (const float &, const float &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/stats/matrix_adjust_eigen.cpp:21:

In file included from /build/source/src/lib/Eigen/Dense:1:

In file included from /build/source/src/lib/Eigen/Core:367:

/build/source/src/lib/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_log_op<float> (const float &)>' is deprecated [-Wdeprecated-declarations]

  320 |   typedef typename std::result_of<T>::type type1;

      |                         ^

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_log_op<float> (const float &)>' requested here

   21 |   typedef typename result_of<

      |                    ^

/build/source/src/lib/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>>>>' requested here

  497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>

      |                                                        ^

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_log_op<float>, const CwiseBinaryOp<scalar_quotient_op<float, float>, const ArrayWrapper<const Matrix<float, 20, 20, 1, 20, 20>>, const ArrayWrapper<const Matrix<float, 20, 20, 1, 20, 20>>>>>' required here

   95 |   : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type

      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_log_op<float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>>, Eigen::Dense>' requested here

   55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator

      |                             ^

/build/source/src/stats/matrix_adjust_eigen.cpp:305:43: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_log_op<float>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<float>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>, const Eigen::ArrayWrapper<const Eigen::Matrix<float, 20, 20, 1>>>>' requested here

  305 |     MatrixN tmp = (x.array() / q.array()).log();

      |                                           ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<Eigen::internal::scalar_log_op<float> (const float &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/stats/matrix_adjust_eigen.cpp:21:

In file included from /build/source/src/lib/Eigen/Dense:1:

In file included from /build/source/src/lib/Eigen/Core:367:

/build/source/src/lib/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_abs2_op<float> (const float &)>' is deprecated [-Wdeprecated-declarations]

  320 |   typedef typename std::result_of<T>::type type1;

      |                         ^

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_abs2_op<float> (const float &)>' requested here

   21 |   typedef typename result_of<

      |                    ^

/build/source/src/lib/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, const Eigen::Matrix<float, 20, 20, 1>>>' requested here

  497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>

      |                                                        ^

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_abs2_op<float>, const Matrix<float, 20, 20, 1, 20, 20>>>' required here

   95 |   : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type

      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<float>, const Eigen::Matrix<float, 20, 20, 1>, Eigen::Dense>' requested here

   55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator

      |                             ^

/build/source/src/lib/Eigen/src/Core/Dot.h:98:31: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<float>, const Eigen::Matrix<float, 20, 20, 1>>' requested here

   98 |   return numext::real((*this).cwiseAbs2().sum());

      |                               ^

/build/source/src/lib/Eigen/src/Core/Dot.h:110:23: note: in instantiation of member function 'Eigen::MatrixBase<Eigen::Matrix<float, 20, 20, 1>>::squaredNorm' requested here

  110 |   return numext::sqrt(squaredNorm());

      |                       ^

/build/source/src/stats/matrix_adjust_eigen.cpp:178:27: note: in instantiation of member function 'Eigen::MatrixBase<Eigen::Matrix<float, 20, 20, 1>>::norm' requested here

  178 |         norm_resids_x = resids_x.norm();

      |                                  ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<Eigen::internal::scalar_abs2_op<float> (const float &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/stats/matrix_adjust_eigen.cpp:21:

In file included from /build/source/src/lib/Eigen/Dense:1:

In file included from /build/source/src/lib/Eigen/Core:367:

/build/source/src/lib/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_conj_product_op<float> (const float &, const float &)>' is deprecated [-Wdeprecated-declarations]

  320 |   typedef typename std::result_of<T>::type type1;

      |                         ^

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:33:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_conj_product_op<float> (const float &, const float &)>' requested here

   33 |   typedef typename result_of<

      |                    ^

/build/source/src/lib/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<float>, const Eigen::Block<Eigen::Matrix<float, 20, 20, 1>, 1, 20, true>, const Eigen::Block<Eigen::Matrix<float, 1, 400>, 1, 20>>>' requested here

  497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>

      |                                                        ^

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:149:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseBinaryOp<scalar_conj_product_op<float, float>, const Block<Matrix<float, 20, 20, 1, 20, 20>, 1, 20, true>, const Block<Matrix<float, 1, 400, 1, 1, 400>, 1, 20, false>>>' required here

  149 |   : public internal::generic_xpr_base<CwiseBinaryOp<BinaryOp, Lhs, Rhs> >::type

      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/build/source/src/lib/Eigen/src/Core/CwiseBinaryOp.h:78:10: note: in instantiation of template class 'Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_conj_product_op<float>, const Eigen::Block<Eigen::Matrix<float, 20, 20, 1>, 1, 20, true>, const Eigen::Block<Eigen::Matrix<float, 1, 400>, 1, 20>, Eigen::Dense>' requested here

   78 |   public CwiseBinaryOpImpl<

      |          ^

/build/source/src/lib/Eigen/src/Core/Dot.h:37:23: note: in instantiation of template class 'Eigen::CwiseBinaryOp<Eigen::internal::scalar_conj_product_op<float>, const Eigen::Block<Eigen::Matrix<float, 20, 20, 1>, 1, 20, true>, const Eigen::Block<Eigen::Matrix<float, 1, 400>, 1, 20>>' requested here

   37 |     return a.template binaryExpr<conj_prod>(b).sum();

      |                       ^

/build/source/src/lib/Eigen/src/Core/Dot.h:84:55: note: in instantiation of member function 'Eigen::internal::dot_nocheck<Eigen::Block<Eigen::Matrix<float, 20, 20, 1>, 1, 20, true>, Eigen::Block<Eigen::Matrix<float, 1, 400>, 1, 20>>::run' requested here

   84 |   return internal::dot_nocheck<Derived,OtherDerived>::run(*this, other);

      |                                                       ^

/build/source/src/stats/matrix_adjust_eigen.cpp:248:45: note: in instantiation of function template specialization 'Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<float, 20, 20, 1>, 1, 20, true>>::dot<Eigen::Block<Eigen::Matrix<float, 1, 400>, 1, 20>>' requested here

  248 |         W(m - 1, m - 1) += workspace.row(i).dot(grad_re.segment<N>(i * N));

      |                                             ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<Eigen::internal::scalar_conj_product_op<float> (const float &, const float &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

In file included from /build/source/src/stats/matrix_adjust_eigen.cpp:21:

In file included from /build/source/src/lib/Eigen/Dense:1:

In file included from /build/source/src/lib/Eigen/Core:367:

/build/source/src/lib/Eigen/src/Core/util/Meta.h:320:25: warning: 'result_of<Eigen::internal::scalar_abs_op<float> (const float &)>' is deprecated [-Wdeprecated-declarations]

  320 |   typedef typename std::result_of<T>::type type1;

      |                         ^

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:21:20: note: in instantiation of template class 'Eigen::internal::result_of<Eigen::internal::scalar_abs_op<float> (const float &)>' requested here

   21 |   typedef typename result_of<

      |                    ^

/build/source/src/lib/Eigen/src/Core/util/XprHelper.h:497:56: note: in instantiation of template class 'Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<float>, const Eigen::Block<Eigen::Block<Eigen::Matrix<float, 40, 40, 1>, 40, 1>, -1, 1>>>' requested here

  497 | template<typename Derived, typename XprKind = typename traits<Derived>::XprKind, typename StorageKind = typename traits<Derived>::StorageKind>

      |                                                        ^

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:95:22: note: in instantiation of default argument for 'generic_xpr_base<CwiseUnaryOp<scalar_abs_op<float>, const Block<Block<Matrix<float, 40, 40, 1, 40, 40>, 40, 1, false>, -1, 1, false>>>' required here

   95 |   : public internal::generic_xpr_base<CwiseUnaryOp<UnaryOp, XprType> >::type

      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

/build/source/src/lib/Eigen/src/Core/CwiseUnaryOp.h:55:29: note: in instantiation of template class 'Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs_op<float>, const Eigen::Block<Eigen::Block<Eigen::Matrix<float, 40, 40, 1>, 40, 1>, -1, 1>, Eigen::Dense>' requested here

   55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator

      |                             ^

/build/source/src/lib/Eigen/src/Core/Dot.h:221:14: note: in instantiation of template class 'Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs_op<float>, const Eigen::Block<Eigen::Block<Eigen::Matrix<float, 40, 40, 1>, 40, 1>, -1, 1>>' requested here

  221 |     return m.cwiseAbs().sum();

      |              ^

/build/source/src/lib/Eigen/src/Core/Dot.h:269:49: note: in instantiation of member function 'Eigen::internal::lpNorm_selector<Eigen::Block<Eigen::Block<Eigen::Matrix<float, 40, 40, 1>, 40, 1>, -1, 1>, 1>::run' requested here

  269 |   return internal::lpNorm_selector<Derived, p>::run(*this);

      |                                                 ^

/build/source/src/lib/Eigen/src/Cholesky/LLT.h:441:65: note: in instantiation of function template specialization 'Eigen::MatrixBase<Eigen::Block<Eigen::Block<Eigen::Matrix<float, 40, 40, 1>, 40, 1>, -1, 1>>::lpNorm<1>' requested here

  441 |       abs_col_sum = m_matrix.col(col).tail(size - col).template lpNorm<1>() + m_matrix.row(col).head(col).template lpNorm<1>();

      |                                                                 ^

/build/source/src/lib/Eigen/src/Cholesky/LLT.h:100:7: note: in instantiation of function template specialization 'Eigen::LLT<Eigen::Matrix<float, 40, 40, 1>>::compute<Eigen::Matrix<float, 40, 40, 1>>' requested here

  100 |       compute(matrix.derived());

      |       ^

/build/source/src/lib/Eigen/src/Cholesky/LLT.h:526:10: note: in instantiation of function template specialization 'Eigen::LLT<Eigen::Matrix<float, 40, 40, 1>>::LLT<Eigen::Matrix<float, 40, 40, 1>>' requested here

  526 |   return LLT<PlainObject>(derived());

      |          ^

/build/source/src/stats/matrix_adjust_eigen.cpp:286:11: note: in instantiation of member function 'Eigen::MatrixBase<Eigen::Matrix<float, 40, 40, 1>>::llt' requested here

  286 |     z = W.llt().solve(z);

      |           ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__type_traits/result_of.h:25:8: note: 'result_of<Eigen::internal::scalar_abs_op<float> (const float &)>' has been explicitly marked deprecated here

   25 | struct _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_NO_SPECIALIZATIONS result_of;

      |        ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:725:41: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'

  725 | #    define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED

      |                                         ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__config:698:49: note: expanded from macro '_LIBCPP_DEPRECATED'

  698 | #      define _LIBCPP_DEPRECATED __attribute__((__deprecated__))

      |                                                 ^

8 warnings generated.

[ 81%] Building CXX object CMakeFiles/diamond.dir/src/align/global_ranking/table.cpp.o

[ 81%] Building CXX object CMakeFiles/diamond.dir/src/output/daa/daa_write.cpp.o

In file included from /build/source/src/run/config.cpp:10:

In file included from /build/source/src/align/global_ranking/global_ranking.h:25:

In file included from /build/source/src/align/global_ranking/../target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 82%] Building CXX object CMakeFiles/diamond.dir/src/search/seed_complexity.cpp.o

[ 82%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/tsv.cpp.o

/build/source/src/data/block/block.cpp:32:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   32 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 83%] Building CXX object CMakeFiles/diamond.dir/src/basic/value.cpp.o

[ 83%] Building CXX object CMakeFiles/diamond.dir/src/masking/motifs.cpp.o

[ 84%] Building CXX object CMakeFiles/diamond.dir/src/align/alt_hsp.cpp.o

[ 85%] Building CXX object CMakeFiles/diamond.dir/src/data/fasta/fasta_file.cpp.o

In file included from /build/source/src/data/dmnd/dmnd.cpp:34:

/build/source/src/util/algo/external_sort.h:27:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   27 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 85%] Building CXX object CMakeFiles/diamond.dir/src/cluster/output.cpp.o

[ 86%] Building CXX object CMakeFiles/diamond.dir/src/cluster/realign.cpp.o

[ 86%] Building CXX object CMakeFiles/diamond.dir/src/cluster/reassign.cpp.o

[ 87%] Building CXX object CMakeFiles/diamond.dir/src/util/tsv/read_tsv.cpp.o

In file included from /build/source/src/cluster/realign.cpp:24:

In file included from /build/source/src/cluster/cluster.h:25:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 87%] Building CXX object CMakeFiles/diamond.dir/src/tools/greedy_vertex_cover.cpp.o

[ 88%] Building CXX object CMakeFiles/diamond.dir/src/cluster/cascaded/recluster.cpp.o

In file included from /build/source/src/cluster/reassign.cpp:23:

In file included from /build/source/src/cluster/cluster.h:25:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 88%] Building CXX object CMakeFiles/diamond.dir/src/cluster/helpers.cpp.o

In file included from /build/source/src/align/global_ranking/table.cpp:21:

In file included from /build/source/src/align/global_ranking/global_ranking.h:25:

In file included from /build/source/src/align/global_ranking/../target.h:30:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 89%] Building CXX object CMakeFiles/diamond.dir/src/search/kmer_ranking.cpp.o

In file included from /build/source/src/cluster/output.cpp:23:

In file included from /build/source/src/cluster/cluster.h:25:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 90%] Building CXX object CMakeFiles/diamond.dir/src/chaining/hamming_ext.cpp.o

/build/source/src/data/sequence_file.cpp:25:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   25 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

[ 90%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_message.cpp.o

[ 91%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blast_stat.cpp.o

[ 91%] Building CXX object CMakeFiles/diamond.dir/src/lib/blast/blastn_score.cpp.o

In file included from /build/source/src/cluster/helpers.cpp:22:

In file included from /build/source/src/cluster/cluster.h:25:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

In file included from /build/source/src/cluster/helpers.cpp:21:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/sstream:323:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__ostream/basic_ostream.h:20:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__ostream/put_character_sequence.h:19:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__locale_dir/pad_and_output.h:16:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/ios:223:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__locale:27:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:652:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string_view:947:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/algorithm:1842:

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__algorithm/copy_n.h:55:37: error: invalid operands to binary expression ('TransformIterator<std::__wrap_iter<std::pair<int, int> *>, Second<int, int>>' and 'difference_type' (aka 'long'))

   55 |   return std::copy(__first, __first + difference_type(__n), __result);

      |                             ~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__vector/vector.h:1339:16: note: in instantiation of function template specialization 'std::copy_n<TransformIterator<std::__wrap_iter<std::pair<int, int> *>, Second<int, int>>, long, int *, 0>' requested here

 1339 |           std::copy_n(__first, __n, __p);

      |                ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__vector/vector.h:503:12: note: in instantiation of function template specialization 'std::vector<int>::__insert_with_size<TransformIterator<std::__wrap_iter<std::pair<int, int> *>, Second<int, int>>, TransformIterator<std::__wrap_iter<std::pair<int, int> *>, Second<int, int>>>' requested here

  503 |     return __insert_with_size(__position, __first, __last, std::distance(__first, __last));

      |            ^

/build/source/src/util/data_structures/flat_array.h:58:9: note: in instantiation of function template specialization 'std::vector<int>::insert<TransformIterator<std::__wrap_iter<std::pair<int, int> *>, Second<int, int>>, 0>' requested here

   58 |                 data_.insert(data_.end(), begin, end);

      |                       ^

/build/source/src/util/data_structures/flat_array.h:243:11: note: in instantiation of function template specialization 'FlatArray<int>::push_back<TransformIterator<std::__wrap_iter<std::pair<int, int> *>, Second<int, int>>>' requested here

  243 |                 r.first.push_back(transform(it2.begin(), Second<Key, Value>()), transform(it2.end(), Second<Key, Value>()));

      |                         ^

/build/source/src/cluster/helpers.cpp:70:9: note: in instantiation of function template specialization 'make_flat_array<std::__wrap_iter<std::pair<int, int> *>>' requested here

   70 |         return make_flat_array(pairs.begin(), pairs.end(), config.threads_);

      |                ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__iterator/reverse_iterator.h:303:1: note: candidate template ignored: could not match 'reverse_iterator<_Iter>' against 'difference_type' (aka 'long')

  303 | operator+(typename reverse_iterator<_Iter>::difference_type __n, const reverse_iterator<_Iter>& __x) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__iterator/wrap_iter.h:228:1: note: candidate template ignored: could not match '__wrap_iter<_Iter1>' against 'difference_type' (aka 'long')

  228 | operator+(typename __wrap_iter<_Iter1>::difference_type __n, __wrap_iter<_Iter1> __x) _NOEXCEPT {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__iterator/move_iterator.h:327:1: note: candidate template ignored: could not match 'move_iterator<_Iter>' against 'difference_type' (aka 'long')

  327 | operator+(typename move_iterator<_Iter>::difference_type __n, const move_iterator<_Iter>& __x) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:3990:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 3990 | operator+(const basic_string<_CharT, _Traits, _Allocator>& __lhs,

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4007:1: note: candidate template ignored: could not match 'const _CharT *' against 'TransformIterator<std::__wrap_iter<std::pair<int, int> *>, Second<int, int>>'

 4007 | operator+(const _CharT* __lhs, const basic_string<_CharT, _Traits, _Allocator>& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4023:1: note: candidate template ignored: could not match 'basic_string<_CharT, _Traits, _Allocator>' against 'difference_type' (aka 'long')

 4023 | operator+(_CharT __lhs, const basic_string<_CharT, _Traits, _Allocator>& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4038:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4038 | operator+(const basic_string<_CharT, _Traits, _Allocator>& __lhs, const _CharT* __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4054:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4054 | operator+(const basic_string<_CharT, _Traits, _Allocator>& __lhs, _CharT __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4071:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4071 | operator+(basic_string<_CharT, _Traits, _Allocator>&& __lhs, const basic_string<_CharT, _Traits, _Allocator>& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4077:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4077 | operator+(const basic_string<_CharT, _Traits, _Allocator>& __lhs, basic_string<_CharT, _Traits, _Allocator>&& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4083:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4083 | operator+(basic_string<_CharT, _Traits, _Allocator>&& __lhs, basic_string<_CharT, _Traits, _Allocator>&& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4089:1: note: candidate template ignored: could not match 'const _CharT *' against 'TransformIterator<std::__wrap_iter<std::pair<int, int> *>, Second<int, int>>'

 4089 | operator+(const _CharT* __lhs, basic_string<_CharT, _Traits, _Allocator>&& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4095:1: note: candidate template ignored: could not match 'basic_string<_CharT, _Traits, _Allocator>' against 'difference_type' (aka 'long')

 4095 | operator+(_CharT __lhs, basic_string<_CharT, _Traits, _Allocator>&& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4102:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4102 | operator+(basic_string<_CharT, _Traits, _Allocator>&& __lhs, const _CharT* __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4108:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4108 | operator+(basic_string<_CharT, _Traits, _Allocator>&& __lhs, _CharT __rhs) {

      | ^

In file included from /build/source/src/cluster/helpers.cpp:21:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/sstream:323:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__ostream/basic_ostream.h:20:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__ostream/put_character_sequence.h:19:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__locale_dir/pad_and_output.h:16:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/ios:223:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__locale:27:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:652:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string_view:947:

In file included from /nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/algorithm:1842:

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__algorithm/copy_n.h:55:37: error: invalid operands to binary expression ('TransformIterator<std::__wrap_iter<std::pair<long, long> *>, Second<long, long>>' and 'difference_type' (aka 'long'))

   55 |   return std::copy(__first, __first + difference_type(__n), __result);

      |                             ~~~~~~~ ^ ~~~~~~~~~~~~~~~~~~~~

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__vector/vector.h:1339:16: note: in instantiation of function template specialization 'std::copy_n<TransformIterator<std::__wrap_iter<std::pair<long, long> *>, Second<long, long>>, long, long *, 0>' requested here

 1339 |           std::copy_n(__first, __n, __p);

      |                ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__vector/vector.h:503:12: note: in instantiation of function template specialization 'std::vector<long>::__insert_with_size<TransformIterator<std::__wrap_iter<std::pair<long, long> *>, Second<long, long>>, TransformIterator<std::__wrap_iter<std::pair<long, long> *>, Second<long, long>>>' requested here

  503 |     return __insert_with_size(__position, __first, __last, std::distance(__first, __last));

      |            ^

/build/source/src/util/data_structures/flat_array.h:58:9: note: in instantiation of function template specialization 'std::vector<long>::insert<TransformIterator<std::__wrap_iter<std::pair<long, long> *>, Second<long, long>>, 0>' requested here

   58 |                 data_.insert(data_.end(), begin, end);

      |                       ^

/build/source/src/util/data_structures/flat_array.h:243:11: note: in instantiation of function template specialization 'FlatArray<long>::push_back<TransformIterator<std::__wrap_iter<std::pair<long, long> *>, Second<long, long>>>' requested here

  243 |                 r.first.push_back(transform(it2.begin(), Second<Key, Value>()), transform(it2.end(), Second<Key, Value>()));

      |                         ^

/build/source/src/cluster/helpers.cpp:70:9: note: in instantiation of function template specialization 'make_flat_array<std::__wrap_iter<std::pair<long, long> *>>' requested here

   70 |         return make_flat_array(pairs.begin(), pairs.end(), config.threads_);

      |                ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__iterator/reverse_iterator.h:303:1: note: candidate template ignored: could not match 'reverse_iterator<_Iter>' against 'difference_type' (aka 'long')

  303 | operator+(typename reverse_iterator<_Iter>::difference_type __n, const reverse_iterator<_Iter>& __x) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__iterator/wrap_iter.h:228:1: note: candidate template ignored: could not match '__wrap_iter<_Iter1>' against 'difference_type' (aka 'long')

  228 | operator+(typename __wrap_iter<_Iter1>::difference_type __n, __wrap_iter<_Iter1> __x) _NOEXCEPT {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/__iterator/move_iterator.h:327:1: note: candidate template ignored: could not match 'move_iterator<_Iter>' against 'difference_type' (aka 'long')

  327 | operator+(typename move_iterator<_Iter>::difference_type __n, const move_iterator<_Iter>& __x) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:3990:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 3990 | operator+(const basic_string<_CharT, _Traits, _Allocator>& __lhs,

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4007:1: note: candidate template ignored: could not match 'const _CharT *' against 'TransformIterator<std::__wrap_iter<std::pair<long, long> *>, Second<long, long>>'

 4007 | operator+(const _CharT* __lhs, const basic_string<_CharT, _Traits, _Allocator>& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4023:1: note: candidate template ignored: could not match 'basic_string<_CharT, _Traits, _Allocator>' against 'difference_type' (aka 'long')

 4023 | operator+(_CharT __lhs, const basic_string<_CharT, _Traits, _Allocator>& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4038:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4038 | operator+(const basic_string<_CharT, _Traits, _Allocator>& __lhs, const _CharT* __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4054:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4054 | operator+(const basic_string<_CharT, _Traits, _Allocator>& __lhs, _CharT __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4071:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4071 | operator+(basic_string<_CharT, _Traits, _Allocator>&& __lhs, const basic_string<_CharT, _Traits, _Allocator>& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4077:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4077 | operator+(const basic_string<_CharT, _Traits, _Allocator>& __lhs, basic_string<_CharT, _Traits, _Allocator>&& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4083:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4083 | operator+(basic_string<_CharT, _Traits, _Allocator>&& __lhs, basic_string<_CharT, _Traits, _Allocator>&& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4089:1: note: candidate template ignored: could not match 'const _CharT *' against 'TransformIterator<std::__wrap_iter<std::pair<long, long> *>, Second<long, long>>'

 4089 | operator+(const _CharT* __lhs, basic_string<_CharT, _Traits, _Allocator>&& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4095:1: note: candidate template ignored: could not match 'basic_string<_CharT, _Traits, _Allocator>' against 'difference_type' (aka 'long')

 4095 | operator+(_CharT __lhs, basic_string<_CharT, _Traits, _Allocator>&& __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4102:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4102 | operator+(basic_string<_CharT, _Traits, _Allocator>&& __lhs, const _CharT* __rhs) {

      | ^

/nix/store/7fsmzzzgkjq3dma1vz6406199xqqz1v3-filc-libcxx-git/include/c++/string:4108:1: note: candidate template ignored: could not match 'basic_string' against 'TransformIterator'

 4108 | operator+(basic_string<_CharT, _Traits, _Allocator>&& __lhs, _CharT __rhs) {

      | ^

1 warning and 2 errors generated.

make[2]: *** [CMakeFiles/diamond.dir/build.make:1941: CMakeFiles/diamond.dir/src/cluster/helpers.cpp.o] Error 1

make[2]: *** Waiting for unfinished jobs....

In file included from /build/source/src/cluster/cascaded/recluster.cpp:21:

In file included from /build/source/src/cluster/cascaded/cascaded.h:23:

In file included from /build/source/src/cluster/cascaded/../cluster.h:25:

/build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

   24 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

1 warning generated.

In file included from /build/source/src/tools/greedy_vertex_cover.cpp:30:

/build/source/src/util/algo/algo.h:5:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]

    5 | #define _REENTRANT

      |         ^

<built-in>:474:9: note: previous definition is here

  474 | #define _REENTRANT 1

      |         ^

/build/source/src/tools/greedy_vertex_cover.cpp:150:53: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]

  150 |         FlatArray<Edge> edge_array = make_flat_array_dense(move(edges), (Int)acc2oid.size(), config.threads_, Edge::GetKey());

      |                                                            ^

      |                                                            std::

2 warnings generated.

make[1]: *** [CMakeFiles/Makefile2:194: CMakeFiles/diamond.dir/all] Error 2

make: *** [Makefile:146: all] Error 2

error: Cannot build '/nix/store/rgj0vagmyg73zsjz80l89rxcjgl37n08-cscope-x86_64-unknown-linux-gnufilc0-15.9.drv'.
       Reason: 1 dependency failed.
       Output paths:
         /nix/store/4lcmgswz8qwiqakkmb6d1ba80yghhfhk-cscope-x86_64-unknown-linux-gnufilc0-15.9

error: Cannot build '/nix/store/11bgclrzry5a99xsnny4712zdaxh05s4-debugedit-x86_64-unknown-linux-gnufilc0-5.0.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/xwqy4xrwhxa0vgjwqckhfldzycy4kh9f-debugedit-x86_64-unknown-linux-gnufilc0-5.0
       Last 25 log lines:
       >
       > ## ------------- ##
       > ## Test results. ##
       > ## ------------- ##
       >
       > ERROR: All 26 tests were run,
       > 21 failed unexpectedly.
       > ## -------------------------- ##
       > ## testsuite.log was created. ##
       > ## -------------------------- ##
       >
       > Please send 'tests/testsuite.log' and all information you think might help:
       >
       >    To: <debugedit@sourceware.org>
       >    Subject: [debugedit 5.0] testsuite: 3 5 6 7 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 26 failed
       >
       > You may investigate any problem if you feel able to do so, in which
       > case the test suite provides a good starting point.  Its output may
       > be found below 'tests/testsuite.dir'.
       >
       > make[2]: *** [Makefile:460: check-local] Error 1
       > make[2]: Leaving directory '/build/debugedit/tests'
       > make[1]: *** [Makefile:321: check-am] Error 2
       > make[1]: Leaving directory '/build/debugedit/tests'
       > make: *** [Makefile:769: check-recursive] Error 1
       For full logs, run:
         nix log /nix/store/11bgclrzry5a99xsnny4712zdaxh05s4-debugedit-x86_64-unknown-linux-gnufilc0-5.0.drv

error: Cannot build '/nix/store/cmwr2ipgkbj5fsbzh8z6qn82xywqdbfi-detox-x86_64-unknown-linux-gnufilc0-2.0.0.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/jnd6mcidzxlz8afirihkxxq15ifpx55q-detox-x86_64-unknown-linux-gnufilc0-2.0.0
       Last 25 log lines:
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: filter.o:1:3: invalid character
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: filter.o:1:3: syntax error, unexpected end of file
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: filter.o: not an object or archive
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: parse_options.o:1:3: invalid character
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: parse_options.o:1:3: syntax error, unexpected end of file
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: parse_options.o: not an object or archive
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: parse_table.o:1:3: invalid character
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: parse_table.o:1:3: syntax error, unexpected end of file
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: parse_table.o: not an object or archive
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: sequence.o:1:3: invalid character
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: sequence.o:1:3: syntax error, unexpected end of file
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: sequence.o: not an object or archive
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: table.o:1:3: invalid character
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: table.o:1:3: syntax error, unexpected end of file
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: table.o: not an object or archive
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: wrapped.o:1:3: invalid character
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: wrapped.o:1:3: syntax error, unexpected end of file
       > /nix/store/fmj1ilm5jk1hba6s3cv6gkpgsjvkxaqv-binutils-2.43.1/bin/ld: error: wrapped.o: not an object or archive
       > /nix/store/sn36kmszyx8bbq5fcz8xgwls8wdznj8p-filc-crt-lib/filc_crt.o:function main:(.text.unlikely.+0xb): error: undefined reference to 'pizlonated_main'
       > clang-20: error: linker command failed with exit code 1 (use -v to see invocation)
       > make[2]: *** [Makefile:512: detox] Error 1
       > make[2]: Leaving directory '/build/source/src'
       > make[1]: *** [Makefile:409: all] Error 2
       > make[1]: Leaving directory '/build/source/src'
       > make: *** [Makefile:545: all-recursive] Error 1
       For full logs, run:
         nix log /nix/store/cmwr2ipgkbj5fsbzh8z6qn82xywqdbfi-detox-x86_64-unknown-linux-gnufilc0-2.0.0.drv

error: Cannot build '/nix/store/hq0y93bl5gfsrja7ykzhazls8rcnp6a4-dev86-x86_64-unknown-linux-gnufilc0-1.0.1.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/l1x1ljf5zc1j7wlqif0hd5iviq8qqvkg-dev86-x86_64-unknown-linux-gnufilc0-1.0.1
       Last 25 log lines:
       > ar86 r /build/source/libc/libc.a brk.o
       > make[4]: Leaving directory '/build/source/libc/bcc'
       > make[4]: Entering directory '/build/source/libc/error'
       > ncc -Mn -O -I -I/build/source/libc/include -I/build/source/libc/kinclude -D__LIBC__   -c -o error.o error.c
       > filc safety error: cannot access pointer to free object.
       >     pointer: 0x7fffe33124b0,0x7fffe33124a0,0x7fffe33124a0,aux=0x7fffe3350fc0,free
       >     expected valid capability with ptr aligned to 8 bytes.
       > semantic origin:
       >     (copt) <somewhere>: main
       > check scheduled at:
       >     (copt) <somewhere>: main
       >     (libc.so.6666) ../sysdeps/nptl/libc_start_call_main.h:58:16: __libc_start_call_main
       >     (libc.so.6666) ../csu/libc-start.c:161:3: __libc_start_main
       >     (libpizlo.so) <runtime>: start_program
       > [1630] filc panic: thwarted a futile attempt to violate memory safety.
       > /build/source/lib/bcc/copt: killed by signal 5
       > make[4]: *** [<builtin>: error.o] Error 1
       > make[4]: Leaving directory '/build/source/libc/error'
       > make[3]: *** [Makefile:38: /build/source/libc/libc.a] Error 1
       > make[3]: Leaving directory '/build/source/libc'
       > make[2]: *** [make.fil:262: library] Error 2
       > make[2]: Leaving directory '/build/source'
       > make[1]: *** [Makefile:32: all] Error 2
       > make[1]: Leaving directory '/build/source'
       > make: *** [GNUmakefile:6: all] Error 2
       For full logs, run:
         nix log /nix/store/hq0y93bl5gfsrja7ykzhazls8rcnp6a4-dev86-x86_64-unknown-linux-gnufilc0-1.0.1.drv

error: Cannot build '/nix/store/v47mwdns4b6l3n2mjdhajf538ck4h8p7-dfu-programmer-x86_64-unknown-linux-gnufilc0-0.7.2.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/n4xda0l822arnirhjx7nshr9a1j33b55-dfu-programmer-x86_64-unknown-linux-gnufilc0-0.7.2
       Last 25 log lines:
       > config.status: creating src/config.h
       > config.status: executing depfiles commands
       > Running phase: buildPhase
       > build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
       > Making all in src
       > make[1]: Entering directory '/build/dfu-programmer-0.7.2/src'
       > make  all-am
       > make[2]: Entering directory '/build/dfu-programmer-0.7.2/src'
       > clang -DHAVE_CONFIG_H -I.    -Wall -g -O2 -c main.c
       > clang -DHAVE_CONFIG_H -I.    -Wall -g -O2 -c arguments.c
       > arguments.c:723:47: error: call to undeclared function 'rpl_malloc'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
       >   723 |                     serial_data = (int16_t *) malloc( (num_digits/2) * sizeof(int16_t) );
       >       |                                               ^
       > ./config.h:72:16: note: expanded from macro 'malloc'
       >    72 | #define malloc rpl_malloc
       >       |                ^
       > arguments.c:723:35: warning: cast to 'int16_t *' (aka 'short *') from smaller integer type 'int' [-Wint-to-pointer-cast]
       >   723 |                     serial_data = (int16_t *) malloc( (num_digits/2) * sizeof(int16_t) );
       >       |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       > 1 warning and 1 error generated.
       > make[2]: *** [Makefile:276: arguments.o] Error 1
       > make[2]: Leaving directory '/build/dfu-programmer-0.7.2/src'
       > make[1]: *** [Makefile:165: all] Error 2
       > make[1]: Leaving directory '/build/dfu-programmer-0.7.2/src'
       > make: *** [Makefile:245: all-recursive] Error 1
       For full logs, run:
         nix log /nix/store/v47mwdns4b6l3n2mjdhajf538ck4h8p7-dfu-programmer-x86_64-unknown-linux-gnufilc0-0.7.2.drv

error: Cannot build '/nix/store/0ki8rd23akaqnxccfp3wwhg6gkz6vlqr-dhex-x86_64-unknown-linux-gnufilc0-0.69.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/cxcc24fi5kk5i6hcn44d60618r0ndnic-dhex-x86_64-unknown-linux-gnufilc0-0.69
       Last 14 log lines:
       > Running phase: unpackPhase
       > unpacking source archive /nix/store/mn5nq60zwk8qcncrphbwyqcgcr5nkcmb-dhex_0.69.tar.gz
       > source root is dhex_0.69
       > setting SOURCE_DATE_EPOCH to timestamp 1547914657 of file "dhex_0.69/ui.h"
       > Running phase: patchPhase
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Running phase: configurePhase
       > no configure script, doing nothing
       > Running phase: buildPhase
       > build flags: SHELL=/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash
       > gcc buffers.c -c -I. -I/usr/include	-I/usr/local/include	-I/usr/include/ncurses	-I/usr/local/include/ncurses -O3 -Wall
       > /nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/bash: line 1: gcc: command not found
       > make: *** [Makefile:40: buffers.o] Error 127
       For full logs, run:
         nix log /nix/store/0ki8rd23akaqnxccfp3wwhg6gkz6vlqr-dhex-x86_64-unknown-linux-gnufilc0-0.69.drv

error: Cannot build '/nix/store/dsr684754lkpbjdi8ka2gbqbqgy9sywf-diamond-x86_64-unknown-linux-gnufilc0-2.1.11.drv'.
       Reason: builder failed with exit code 2.
       Output paths:
         /nix/store/c82vsrqmja56xgpc74wp40gl70k35dgj-diamond-x86_64-unknown-linux-gnufilc0-2.1.11
       Last 25 log lines:
       > make[2]: *** Waiting for unfinished jobs....
       > In file included from /build/source/src/cluster/cascaded/recluster.cpp:21:
       > In file included from /build/source/src/cluster/cascaded/cascaded.h:23:
       > In file included from /build/source/src/cluster/cascaded/../cluster.h:25:
       > /build/source/src/util/data_structures/flat_array.h:24:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]
       >    24 | #define _REENTRANT
       >       |         ^
       > <built-in>:474:9: note: previous definition is here
       >   474 | #define _REENTRANT 1
       >       |         ^
       > 1 warning generated.
       > In file included from /build/source/src/tools/greedy_vertex_cover.cpp:30:
       > /build/source/src/util/algo/algo.h:5:9: warning: '_REENTRANT' macro redefined [-Wmacro-redefined]
       >     5 | #define _REENTRANT
       >       |         ^
       > <built-in>:474:9: note: previous definition is here
       >   474 | #define _REENTRANT 1
       >       |         ^
       > /build/source/src/tools/greedy_vertex_cover.cpp:150:53: warning: unqualified call to 'std::move' [-Wunqualified-std-cast-call]
       >   150 |         FlatArray<Edge> edge_array = make_flat_array_dense(move(edges), (Int)acc2oid.size(), config.threads_, Edge::GetKey());
       >       |                                                            ^
       >       |                                                            std::
       > 2 warnings generated.
       > make[1]: *** [CMakeFiles/Makefile2:194: CMakeFiles/diamond.dir/all] Error 2
       > make: *** [Makefile:146: all] Error 2
       For full logs, run:
         nix log /nix/store/dsr684754lkpbjdi8ka2gbqbqgy9sywf-diamond-x86_64-unknown-linux-gnufilc0-2.1.11.drv

error: Cannot build '/nix/store/sis0viyfg5mgb33ybpf8kavf720s2jxh-dictd-x86_64-unknown-linux-gnufilc0-1.13.3.drv'.
       Reason: 1 dependency failed.
       Output paths:
         /nix/store/0k80ysbfxyksy64ya6w6lhr12ds4slji-dictd-x86_64-unknown-linux-gnufilc0-1.13.3

error: Cannot build '/nix/store/jng2a1q5hqd84sr5vylm35ri2gpqrmja-diction-x86_64-unknown-linux-gnufilc0-1.13.drv'.
       Reason: builder failed with exit code 1.
       Output paths:
         /nix/store/488pankllxrf4534hm4i22hjw5145c4m-diction-x86_64-unknown-linux-gnufilc0-1.13
       Last 25 log lines:
       > Updating Autotools / GNU config script to a newer upstream version: ./config.guess
       > Running phase: updateAutotoolsGnuConfigScriptsPhase
       > Updating Autotools / GNU config script to a newer upstream version: ./config.sub
       > Updating Autotools / GNU config script to a newer upstream version: ./config.guess
       > Running phase: configurePhase
       > patching script interpreter paths in ./configure
       > ./configure: interpreter directive changed from "#! /bin/sh" to "/nix/store/cfqbabpc7xwg8akbcchqbq3cai6qq2vs-bash-5.2p37/bin/sh"
       > configure flags: --prefix=/nix/store/488pankllxrf4534hm4i22hjw5145c4m-diction-x86_64-unknown-linux-gnufilc0-1.13 --build=x86_64-unknown-linux-gnu --host=x86_64-unknown-linux-gnufilc0
       > checking build system type... x86_64-unknown-linux-gnu
       > checking host system type... x86_64-unknown-linux-gnufilc0
       > checking for x86_64-unknown-linux-gnufilc0-gcc... clang
       > checking whether the C compiler works... yes
       > checking for C compiler default output file name... a.out
       > checking for suffix of executables...
       > checking whether we are cross compiling... yes
       > checking for suffix of object files... o
       > checking whether we are using the GNU C compiler... yes
       > checking whether clang accepts -g... yes
       > checking for clang option to accept ISO C89... none needed
       > checking for a BSD-compatible install... /nix/store/rry6qingvsrqmc7ll7jgaqpybcbdgf5v-coreutils-9.7/bin/install -c
       > checking for strerror... yes
       > checking for library containing regcomp... none required
       > checking for broken realloc... configure: error: in `/build/diction-1.13':
       > configure: error: cannot run test program while cross compiling
       > See `config.log' for more details
       For full logs, run:
         nix log /nix/store/jng2a1q5hqd84sr5vylm35ri2gpqrmja-diction-x86_64-unknown-linux-gnufilc0-1.13.drv

error: Cannot build '/nix/store/4iml3h755av4pfqxwjzfazkzbj74q1vy-dictu-x86_64-unknown-linux-gnufilc0-0.25.0.drv'.
       Reason: builder failed with exit code 133.
       Output paths:
         /nix/store/m7hv4n08ynlxvl0aim3rjmnf2afg7n4v-dictu-x86_64-unknown-linux-gnufilc0-0.25.0
       Last 25 log lines:
       > [ 93%] Linking C shared library libdictu_api.so
       > [ 93%] Built target dictu_api_static
       > [ 93%] Built target dictu_api
       > [ 94%] Building C object src/cli/CMakeFiles/dictu.dir/main.c.o
       > [ 96%] Building C object src/cli/CMakeFiles/dictu.dir/linenoise.c.o
       > [ 98%] Building C object src/cli/CMakeFiles/dictu.dir/encodings/utf8.c.o
       > [100%] Linking C executable /build/source/dictu
       > [100%] Built target dictu
       > Running phase: checkPhase
       > filc safety error: cannot read pointer with null object.
       >     pointer: 0x7fffdcf28f50,<null>
       >     expected 4 bytes.
       > semantic origin:
       >     (dictu) <somewhere>: callValue
       > check scheduled at:
       >     (dictu) <somewhere>: callValue
       >     (dictu) <somewhere>: dictuInterpret
       >     (dictu) <somewhere>: declareListMethods
       >     (dictu) <somewhere>: dictuInitVM
       >     (dictu) <somewhere>: main
       >     (libc.so.6666) ../sysdeps/nptl/libc_start_call_main.h:58:16: __libc_start_call_main
       >     (libc.so.6666) ../csu/libc-start.c:161:3: __libc_start_main
       >     (libpizlo.so) <runtime>: start_program
       > [424] filc panic: thwarted a futile attempt to violate memory safety.
       > /nix/store/ls4rca5iy2gi4227mkdh0ihjxzcw797l-stdenv-linux/setup: line 1764:   424 Trace/breakpoint trap   ./dictu tests/runTests.du
       For full logs, run:
         nix log /nix/store/4iml3h755av4pfqxwjzfazkzbj74q1vy-dictu-x86_64-unknown-linux-gnufilc0-0.25.0.drv

error: build of '/nix/store/0ki8rd23akaqnxccfp3wwhg6gkz6vlqr-dhex-x86_64-unknown-linux-gnufilc0-0.69.drv^*', '/nix/store/11bgclrzry5a99xsnny4712zdaxh05s4-debugedit-x86_64-unknown-linux-gnufilc0-5.0.drv^*', '/nix/store/4iml3h755av4pfqxwjzfazkzbj74q1vy-dictu-x86_64-unknown-linux-gnufilc0-0.25.0.drv^*', '/nix/store/cmwr2ipgkbj5fsbzh8z6qn82xywqdbfi-detox-x86_64-unknown-linux-gnufilc0-2.0.0.drv^*', '/nix/store/dsr684754lkpbjdi8ka2gbqbqgy9sywf-diamond-x86_64-unknown-linux-gnufilc0-2.1.11.drv^*', '/nix/store/hq0y93bl5gfsrja7ykzhazls8rcnp6a4-dev86-x86_64-unknown-linux-gnufilc0-1.0.1.drv^*', '/nix/store/jng2a1q5hqd84sr5vylm35ri2gpqrmja-diction-x86_64-unknown-linux-gnufilc0-1.13.drv^*', '/nix/store/rgj0vagmyg73zsjz80l89rxcjgl37n08-cscope-x86_64-unknown-linux-gnufilc0-15.9.drv^*', '/nix/store/sis0viyfg5mgb33ybpf8kavf720s2jxh-dictd-x86_64-unknown-linux-gnufilc0-1.13.3.drv^*', '/nix/store/v47mwdns4b6l3n2mjdhajf538ck4h8p7-dfu-programmer-x86_64-unknown-linux-gnufilc0-0.7.2.drv^*' failed